PsychENCODE Knowledge Portal

syn4921369

Created By Mette Peters Mette

projectDescription: The PsychENCODE Consortium is a multi-site investigation of the genomic basis of neuropsychiatric diseases. Investigators generate large-scale data sets across several major psychiatric disorders.
projectDisplayName: PsychENCODE Knowledge Portal
projectImageFileName: PsychENCODE%2DLogo%2DHorizontal%2DFNL2x%5Fcopy%2Epng
July 2021 Data release for datasets in publication or preprint
Data access application
See here for how to be notified about data releases and other updates
Please indicate the Synapse ID of any file you reference in your question on the forum
problem with accessing "ADMC Duke Biocrates MxP Quant 500 Ultra Performance Liquid Chromatography Longitudinal QC (ADNI 1_GO_2)" file
Does PsychENCODE provide any clinical records about participants?
Question in request access in NRGR
Fetal eQTLs - effect, non-effect allele and se information
Synapse Token not received
DATASET FINDING ISSUE. HELP ME OUT PLEASE :)
"Access denied" when downloading publicly available dataset
Countersigned contract + end of project
Metadata scRNA-seq and scATAC-seq data from UCLA-ASD missing
Did not recieve the request token
Help with Synapse Token request
Dataset
New data access token (syn25922167)
There is a truncated part in a FASTQ file from Yale-ASD
The issue for matching scRNA-seq sample and fastq files.
Ask questions in application data access
EpiMap bed files normalized against input?
Synapse Token not received
Missing data (syn5844980)
Data missing from BipSeq study (syn5844980)?
(syn22755055) Linking libraryID to specimenID or individualID
Token request problem
LIBD_szControl Missing Information
Do Yale-ASD and BrainVar provide total RNA-seq data?
BrainGVEX table empty
Cannot access data after being approved
Sample matching between LIBD and CMC HBCC cohorts
access to data
Is it possible to obtain the Polygenic Risk Scores from Gandal et al. per individual?
Raw gene counts from DER-01/DER-02?
Data access from industry
Genotype and Metadata ID Crossmatch
Individuals in processed RNA-seq not found in clinical or metadata files
raw genotype data (not-imputed)
Inquiry about data download permission
Data access -PsychENCODE
Permission denined, please help.
Discrepancies in BrainGVEX sample names between 2016 and newer releases
Rajarajan et al. RNA-seq files
Data structure of ATAC seq peaks (syn8113124) and reference genome used
Brain regions of schizophrenia data
References for syn12976691 Hi-C data
Data structure of syn16563103 single-cell RNA raw data
Rajarajan et al. Hi-C data syn12984505 mapped to hg38
isoQTLs
Wang et al, Science 2018 data access
sample size in genotype data is not equal to that in MetaData
new PsychENCODE tokens
any adaptor for UCLA-ASD miRNAseq?
New Synapse and PsychENCODE tokens
More genotypes in Bipseq VCF than in the study
Incorrect coordinates of PEC Enhancers and QTLs in UCSC Genome Browser
EpiDiff clinical data
Unmet conditions when downloading data after approval
Chip-seq data
phenotype file for LIBD_szControl
schizophrenia data types
Problem accessing the Genotypes data from resource.psychencode.org
questions about samtools and PicardTools metrics in UCLA-ASD metadata file (syn5602933)
eQTL calling
Freeze 1 vs 2
Single cell sequencing technology used in SingleCellRNAseq
getting a new token
Transfer or re-apply
Where can I find phenotype information for these single cell RNAseq samples?
Where can I find phenotype file for BrainSpan?
ethnicity of UCLA-ASD individuals?
Library preparation method for RNAseq of BipSeq
Download File Name Differs From Sample File Name
Why Are NonHuman Primate Datasets Controlled?
April 22 - 2019 update
Pipeline/HiC_matrices/Header_PIP*.tar.gz files appear to be ill-formed
Not clear in UCLA_ASD (syn5602933) samplesheet if a sample is resequenced
March 2019 update
Not all flowcell files in UIC-UChicago-U01MH103340_BrainGVEX_RNAseqMetadata.txt (syn5588763)
Requesting access to YALE-ASD data (syn11699203)
Capstone data update
Can't access Imputed Genotypes Sample Map
Access to specific PsychENCODE datasets
Rajarajan et al. Hi-C contact maps
speed is very very slow about downloading PsychENCODE raw RNAseq data
Yale-ASD RNA-seq sample info
Acces to datasets from multiple human projects
Downloading the data I was granted access to
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