SMC-RNA

syn2813589

Created By J. Christopher Bare chris.bare

Community phase's results
Closure and algorithms getting old
Cannot submit to 'community phase'
Please update us
Training (simulated) readsets should be quantified for their error profiles
Training set results
Potential submission errors
Difficulty Submitting from 7Bridges
Number of cores available
Inconsistency between truth and data in sim31 isoform dataset
Interpreting the pre-leaderboard
When will the spike-in tumor pre-leaderboard be available?
fusionToolEvaluator
reached submission quota??
method of benchmarking / types of events
Spike-in data in round 4
Validation error in submission
Can we see submitted cwls?
Normalization issue with isoform truth files
Has round 4 begun?
A question about the simulation workflow
What is the metric used for scoring performance on isoform-level expression quantification in round1?
Are there any difference between Round 2 and Round 3 simulated data with respect to the simulation procedure?
Has round 3 begun?
dream_runner.py failures
Could we extend the deadline for round 2?
Incorrect Truth bedpe
can one of the organizers please explain this sentence?
sim3* datasets have no truth bedpe files
sim32 dataset contains many bogus reads
Data simulation
simulated read mate-inner-distance
More material for learning about workflow development
Differences between the training datasets and the testing datasets
Where can we find the data used for round 1 testing?
Trouble understanding the purpose of this DREAM challenge
Submission can not be scored
Problem with fusion dataset
Leaderboard
Validation error in submission
submission validation: 403 Client Error: Forbidden You do not have READ permission for the requested entity
How to submit workflow through the web client or command line?
Custom inputs do not match hints
Tool definition failed validation
Planemo versus generic ubuntu installation
submitted but no results
which round counts?
How to integrate custom data sets as hits:synData?
Webinar Series: DREAM on SBG
Submitting to both ISB and SBG?
Can't register our team
Failure on loading the Planemo Image, anyone can help ?
Overall scoring?
Concerns regarding the current evaluation metric for the quantification subchallenge
Problem running RSEM example workflow on google
suggested wiki and code updates
can we get some google coupons for this project
Data Access
leaderboard
Challenge Timeline
Deadlines
MonBUG hackathon in Old Port of Montreal
Data download
Please provide data description
syn9845522
syn5825119
syn8291401
syn22344794
syn10187855
syn18145399
syn18145401
syn7149723
syn7149741
syn7149753
syn7150568

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