Hello,
Just trying to validate a file with this command
genie validate clinical data_clinical_supp_PNOC.txt CHOP
and getting an error
Traceback (most recent call last):
File "/usr/local/bin/genie", line 11, in
sys.exit(main())
File "/usr/local/lib/python2.7/site-packages/processing_sage/__main__.py", line 163, in main
perform_main(syn, args)
File "/usr/local/lib/python2.7/site-packages/processing_sage/__main__.py", line 127, in perform_main
args.func(syn, args)
File "/usr/local/lib/python2.7/site-packages/processing_sage/__main__.py", line 104, in perform_validate
databaseToSynIdMapping = syn.tableQuery('SELECT * FROM syn10967259')
File "/usr/local/lib/python2.7/site-packages/synapseclient/client.py", line 2893, in tableQuery
return CsvFileTable.from_table_query(self, query, **kwargs)
File "/usr/local/lib/python2.7/site-packages/synapseclient/table.py", line 1389, in from_table_query
includeRowIdAndRowVersion=includeRowIdAndRowVersion)
File "/usr/local/lib/python2.7/site-packages/synapseclient/client.py", line 3044, in _queryTableCsv
download_from_table_result = self._waitForAsync(uri=uri, request=download_from_table_request)
File "/usr/local/lib/python2.7/site-packages/synapseclient/client.py", line 2754, in _waitForAsync
result = self.restGET(uri+'/get/%s'%async_job_id['token'], endpoint=endpoint)
File "/usr/local/lib/python2.7/site-packages/synapseclient/client.py", line 3470, in restGET
exceptions._raise_for_status(response, verbose=self.debug)
File "/usr/local/lib/python2.7/site-packages/synapseclient/exceptions.py", line 140, in _raise_for_status
raise SynapseHTTPError(message, response=response)
synapseclient.exceptions.SynapseHTTPError: 403 Client Error: Forbidden
You do not have READ permission for the requested entity.
Created by Pichai Raman ramanp1 Never mind...figured it out. The login wasn't persistent.