schwannoma_differential_expression.txt
syn10881886
Created By
Robert Allaway allawayr
assay: RNA-seq
species: Homo sapiens
studyId: syn2343195
cellType: schwannoma
dataType: geneExpression
studyName: Synodos NF2
tumorType: Schwannoma
accessTeam: 273948
accessType: PUBLIC
fileFormat: txt
initiative: Synodos
isCellLine: Yes
dataSubtype: dataMatrix
nf1Genotype: unknown
analysisType: differentialExpression
compoundDose: 100
compoundName: DMSO,CUDC-907,Panobinostat,GSK2126458
resourceType: analysis
fundingAgency: CTF
genePerturbed: NF2
timePointUnit: hours
isMultiSpecimen: Yes
compoundDoseUnit: nM
specimenIdSource: MGH
isMultiIndividual: Yes
individualIdSource: Sage Bionetworks
genePerturbationType: knockdown, control
cellLineMetadataSynId: syn6138288
experimentalCondition: DMSO,100 nM CUDC-907,100 nM Panobinostat,100 nM GSK2126458
experimentalTimePoint: 24
individualMetadataSynId: syn6138288
genePerturbationTechnology: shRNA
differentialExpressionMethod: edgeR
transcriptQuantificationMethod: bedtools multicov
multipleTestingAdjustmentMethod: Benjamini Hotchberg
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