The project is far from perfect. Any comments or suggestions would be greatly appreciated!! My job is to make your life easier.
Created by Brian Yik Tak Tsui btsui @Meredith Also, I work with folks from Jill Mesirov lab and Trey Ideker lab. Is there any tool that you would like to see this reprocessed public data being integrated with? Like Cytoscape, NDEX, GSEA, gene pattern or genomespace??
The current idea is to integrate the reprocessed data with gene pattern notebook to reduce the painful burden of data cleaning for users. Ah, I see it now! https://github.com/brianyiktaktsui/Skymap/ works. THANK YOU SO MUCH! :) I appreciate the responsiveness and quick fixes. @Meredith , I probably will revamp the wiki, do you have any suggestions? Like what are the missing pieces? My thought would be to put a data description table and keep the wiki on synapse lean. It is a public repo. I just changed the link accordingly. Ah, I see -- is the repo private? I get a 404 when I try to look at the new URL, and perhaps that's what the other user was experiencing too (a 403 under the guise of a 404). https://github.com/brianyiktaktsui/Skymap/blob/master/ is the link I see in the wiki now, and it appears private and/or missing. ?? Hi Meredith,
Thank you so much for pointing out the missing link. I have just fixed the link in the wiki to point to the GitHub page.
I tried to point the users to the GitHub page for the code and data in sage synapse. What do you think?
Cheers,
Brian Hello @btsui -- we just got a report from an end-user who noticed a broken link on the wiki page. Here's what this user said:
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Dear Sir/Madam,
Thank you for creating this amazing resource! I am eager to start using this, but encountered a 404 on one of the links on your front page ("Please see jupyter notebook for annotations and descriptions"): https://github.com/brianyiktaktsui/Skymap/blob/master/DataSlicingExample.ipynb
I thought I should let you know, so you can make that which is amazing even more amazing ;)
Thank you!
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I believe that this file is hosted w/in Synapse -- is it this file? syn11421666 If so, I will direct the user there, but the broken link can be found in the wiki (that goes to the Github page).
Best,
Meredith Slota @ Sage
cc: @Sipko
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