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Hi Everyone, We are trying to convert from compound/target_ids to smiles using PubChem. However pubchem told us more than 50000 IDs are not acceptable. Do you guys have any idea what to do? Or does any one have already converted files? Could you share us? Thank you so much. NAM Team

Created by Teppei Nakano keivard
Hi NAM, Building on Robert?s answers, it would be better if you can use the smiles provided in the round 1 dataset to fetch the PubChem ID?s of the compounds. Further what are the compound ID that your using in the PubChem ID exchange tool. Guru
Admittedly it has been a while since I have used them but Chemspider and Pubchem both have APIs that can be accessed using various R packages. Are you using the PubChem ID Exchange tool? I have not had issues with that limit before.

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Hi Everyone, We are trying to convert from compound/target_ids to smiles using PubChem. However pubchem told us more than 50000 IDs are not acceptable. Do you guys have any idea what to do? Or does any one have already converted files? Could you share us? Thank you so much. NAM Team

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