Hi, thank you for sharing the codes of the figure visualization. These plots are so beautiful. I want to run these codes to understand them and try to apply them to my research. However, I noticed that the input file in each R code was not provided, such as the `xxxdata` in the `F1-F3-GLASS-heatmap.R`. Can you kindly share the input files in the repository? If not all input files can be provided, can you just share the files used in `F1-F3-GLASS-heatmap.R`? ```r ## Load heatmap data ######################## hmapdata <- dbGetQuery(con, read_file("sql/heatmap/heatmap_snv.sql")) snvgdata <- dbGetQuery(con, read_file("sql/heatmap/heatmap_snv_by_gene.sql")) cnv_data <- dbGetQuery(con, read_file("sql/heatmap/heatmap_cnv.sql")) cnvgdata <- dbGetQuery(con, read_file("sql/heatmap/heatmap_cnv_by_gene.sql")) arm_data <- dbGetQuery(con, read_file("sql/heatmap/heatmap_arm.sql")) armadata <- dbGetQuery(con, read_file("sql/heatmap/heatmap_arm_by_arm.sql")) sigsdata <- dbGetQuery(con, read_file("sql/heatmap/heatmap_signatures.sql")) mutfdata <- dbGetQuery(con, read_file("sql/heatmap/heatmap_mf.sql")) clindata <- dbGetQuery(con, read_file("sql/heatmap/heatmap_clinical.sql")) timedata <- dbGetQuery(con, read_file("sql/heatmap/heatmap_time.sql")) anpldata <- dbGetQuery(con, read_file("sql/heatmap/heatmap_aneuploidy.sql")) c710data <- dbGetQuery(con, read_file("sql/heatmap/heatmap_c710.sql")) puridata <- dbGetQuery(con, read_file("sql/heatmap/heatmap_purity.sql")) drivdata <- dbGetQuery(con, read_file("sql/heatmap/heatmap_drivers.sql")) neutrdata <- dbGetQuery(con, read_file("sql/heatmap/heatmap_evolution.sql")) pycldata <- dbGetQuery(con, read_file("sql/heatmap/heatmap_pyclone_clusters.sql")) ``` Thanks

Created by xiaoxiangjiao
Thank you so much!
Thank you @xiaoxiangjiao for your interest in our work. These input data are pulled from our internal database and some of those files also exist in the synapse files and tables folders. However, it can be made easier by sharing the RData file `figure1_3_input.RData` (md5sum: 8b78a9b322708a52822b8cd7cc4ab766) that contains the requested objects. This can be found in the files tab. I hope this helps with your research! -Kevin

Can you share the input files for reproduce the figures? page is loading…