G'day, After searching through papers and the GLASS GitHub, am I correct in assuming that the reference annotations used across all data modalities is GENCODE v19? If so, has this been maintained with the release of new data? In addition, the ref_genes table has seemingly gone through Excel as there are a number of gene symbols that have been converted to dates.

Created by Zachery Moore moore.z
Hi Kevin, Thanks for getting back to me and clearing that up! I thought that was the case, but just wanted to double check. Looking forward to seeing the updated documentation.
Hi @moore.z , Thank you for noting the error in the ref_genes table. It has been fixed. The reference annotation used for DNA (WXS/WGS) analyses in both the original and most recent release was indeed GENCODE v19. The RNA analyses used the Ensembl v75 version. There will be an update to the github page in the coming weeks/months that provides the complete documentation for the RNA analyses. Hope this helps, Kevin

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