I tried to execute the commands below for the meta data and got the following errors. Any help appreciated. METHYLATIONMETA_ID <-'syn2677043' PADDISONMETA_ID <- 'syn3034355' 1. > pcbcMeta <- read.delim(synGet(METHYLATIONMETA_ID), header=T, row.names=1) Error in value[[3L]](cond) : 404 Client Error: The resource you are attempting to access cannot be found 2. > paddisonMeta <- read.delim(synGet(PADDISONMETA_ID), header=T, row.names=1, sep=',', skip=7) Downloading [####################]100.00% 327.0bytes/327.0bytes (164.4kB/s) SampleSheet-Caren.csv Done... Error in read.table(file = file, header = header, sep = sep, quote = quote, : 'file' must be a character string or connection

Created by yuba11
Hi, can you let me know which script you were running where this error was encountered? The Synapse ID of the file would be most useful. Thank you! The Methylation metadata was moved to a Synapse Table (syn3156828). You might be able to replace this code with the following: ```r request <- synTableQuery('select * from syn3156828') pcbcMeta <- request$asDataFrame() ``` I'm thinking that this script was written using an old version of the R Synapse client, which is no longer maintained. The new one, `synapser`, has some differences in syntax. The second one, the `paddisonMeta`, you should be able to use: ```r paddisonMeta <- read.delim(synGet(PADDISONMETA_ID)$path, header=T, row.names=1, sep=',', skip=7) ```

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