Hi,
In the following six dataset pulls, the middle two fail due to permissions errors, but the first and last two are able to be pulled without issue:
cnf_data_resource = syn.tableQuery("SELECT * FROM syn21222341").asDataFrame()
synodos_nf2 = syn.tableQuery("SELECT * FROM syn21520573").asDataFrame()
synodos_nf1 = syn.tableQuery("SELECT * FROM syn21520550").asDataFrame()
jhu_biobank = syn.tableQuery("SELECT * FROM syn20812185").asDataFrame()
nf1_glioma = syn.tableQuery("SELECT * FROM syn21521726").asDataFrame()
pnf_cell_line = syn.tableQuery("SELECT * FROM syn22351884").asDataFrame()
I'm wondering if the synodos_nf1 and jhu_biobank have more restrictive permissions?
Created by Darren Peters dumbledorf Hi @dumbledorf,
Can you please request access for the CTF Cutaneous NF Resource on this page: https://www.synapse.org/#!Synapse:syn22336443/wiki/605246 to make sure you have the correct access permissions to the WGS dataset? Please let me know if you have any questions.
Thanks,
Jineta Thanks @jineta.banerjee , I can confirm the synodos_nf1 dataset is available now.
Can you comment on the following? Getting unauthorized exceptions when I try the WGS data for cNFs:
genes_with_meta = syn.tableQuery("SELECT * FROM syn20551862").asDataFrame()
Hi @dumbledorf,
Thanks for checking out these datasets. Yes, the JHU Biobank dataset does have additional access requirements. Please see "A Nerve Sheath Tumor Bank from Patients with NF1" here: https://www.synapse.org/#!Synapse:syn22336443/wiki/605246
The synodos_nf1 dataset is public. The appropriate access conditions have been updated and it should be available for download now.
Thanks,
Jineta
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synodos_nf1 and jhu_biobank datasets might have different permissions than the rest page is loading…