SC12-007ECTO.181+185+187.5+1+6.26_align.txt

syn2248259

Created By Larsson Omberg larssono

QC: FAILED
DOI: 10.1038/nmeth.2840
UID: SC12-007ECTO.181+185+187.5+1+6.26
run: 181+185+187
Race: unknown
lane: 5+1+6
index: 26.0
Gender: female
center: C4
public: true
Disease: LQT3
comment: early-ECTO
exclude: false
pass_qc: false
Donor_ID: D005B
Genotype: Heterozygous SCN5A 1218C>A, N406K (GTGAACCTGATC->GTGAAACTGATC)
ThawDate: 10/11/2012
dataType: miRNA
fileType: align
Cell_Type: PSC
Ethnicity: Hispanic or Latino
Pubmed_ID: PMC4063274
SampleType: ECTO
XIST_Level: high
Host_Species: human
CellDiffState: ECTO
PassageAtThaw: 18.0
Cell_Line_Type: iPSC
Diffname_short: ECTO
C4_Cell_Line_ID: SC12-007
Donor_Phenotype: LQT3
Originating_Lab: Conklin
Small_Molecules: unknown
XIST_Expression: 281.4220085
DateDNAHarvested: 1/23/2013
DateRNAHarvested: 1/23/2013
Donor_Life_Stage: adult
PassageAtHarvest: 36.0
Tissue_of_Origin: skin
DatemRNAExtracted: 1/28/2013
Culture_Conditions: unknown
DatemiRNAextracted: 1/28/2013
Originating_Lab_ID: LQT3_daughter_of_WTb
biosampleAccession: SAMN05559269
C4_Karyotype_Result: normal
Cell_Line_of_Origin: unknown
Cell_Type_of_Origin: fibroblast
PCBC_Cell_Line_Name: PCBC15hsi2012062201
PassageAtDNAHarvest: 36.0
SampleTypeIncomplete: ECTO
biologicalSampleName: SC12-007ECTO
DateRNASubmittedtoCore: 2/12/2013
High_Confidence_Donor_ID: D005B
Reprogramming_Vector_Type: retrovirus
Cell_Type_of_Origin_Level2: fibroblast
Donor_ID_is_High_Confidence: true
Reprogramming_Gene_Combination: OSKM
Reprogramming_Vector_Type_Level2: integrating
Other_Conditions_During_Reprogramming: unknown
Other_Significant_Contributors_to_line_generation: Shiro Baba

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