SC12-025EB.181.7.14.var.flt.vcf

syn2390856

Created By Kristen Dang kkdang

DOI: 10.1371/journal.pone.0053764,10.1016/j.biomaterials.2014.01.037
UID: SC12-025EB.181.7.14
run: 181
Race: unknown
lane: 7
index: 14
Gender: male
public: true
Disease: unknown
exclude: false
pass_qc: true
Donor_ID: D007
Genotype: not determined
ThawDate: 6/21/2013
dataType: mRNA
fileType: VCF
Cell_Type: PSC
Ethnicity: unknown
LimitedBy: None
Pubmed_ID: 23326500, 24485793
SampleType: EB
XIST_Level: low
VariantOnly: True
mappedReads: 2.12516E7
numberReads: 2.3210498E7
Host_Species: human
PassageAtThaw: 21.0
percentMapped: 0.915602931053009
Cell_Line_Type: iPSC
Diffname_short: EB
C4_Cell_Line_ID: SC12-025
Donor_Phenotype: unknown
Originating_Lab: Slack
Small_Molecules: None
XIST_Expression: 0.7711982159999999
DateRNAHarvested: 8/2/2013
Donor_Life_Stage: newborn
PassageAtHarvest: 24.0
Tissue_of_Origin: foreskin
DatemRNAExtracted: 1/10/2013
Culture_Conditions: DMEM-F12/KOSR/0.1 mM BME/0.1mM NEAA/0.1mM L-gluatime/20ng/ml bFGF
Originating_Lab_ID: Sendai-9-1
C4_Karyotype_Result: normal
Cell_Line_of_Origin: unknown
Cell_Type_of_Origin: fibroblast
PCBC_Cell_Line_Name: PCBC16hsi2011111503
SampleTypeIncomplete: EB
biologicalSampleName: SC12-025EB
DateRNASubmittedtoCore: 2/12/2013
Reprogramming_Vector_Type: Sendai virus
Cell_Type_of_Origin_Level2: fibroblast
Donor_ID_is_High_Confidence: true
Reprogramming_Gene_Combination: OSKM
Reprogramming_Vector_Type_Level2: nonintegrating
Other_Conditions_During_Reprogramming: Cultured on MEFs
Other_Significant_Contributors_to_line_generation: Lucas V. Greder, James Dutton

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