Did the WGS variant VCF files already lifted to Hg38?

Did the WGS variant VCF files already lifted to Hg38? since it is mapped to Hg19 reference. Can I directly use it for single cell data demultiplexing?

Created by Shiwei Liu shiwliu
Hi @shiwliu, Thanks for your question. Can you specify a synapse id for the files that you are referring to? If you are referring to variant calls from the WGS Harmonization study ( https://www.synapse.org/#!Synapse:syn22264775), they have not been lifted over to Hg38. We do have plans to reprocess this entire dataset using the GRCh38 genome, but do not yet have a timetable for this release. Best, Will

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Did the WGS variant VCF files already lifted to Hg38? since it is mapped to Hg19 reference. Can I directly use it for single cell data demultiplexing?

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