Can someone explain what are exactly the duplicated "resequenced" files in the MSSM_sample_FASTQs data? e.g. hB_RNA_9212.accepted_hits.sort.coord.combined.fastq.gz and hB_RNA_9212_resequenced.accepted_hits.sort.coord.combined.fastq.gz Are the resequenced data more reliable? What data should we use then? Thanks.

Created by Fabrice Leclerc leclerc
The resequenced data was done at the library level (ie, same library sequenced 2x). You will need to look at the total and mapped reads to evaluate which sample to use (or, if it makes sense to for you to combine the data)

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