Hi,
Can someone please help me locate the fastq files for the Mayo Gene Expression (RNA-seq) study. I see the BAM files and counts here: https://www.synapse.org/#!Synapse:syn20818651
Sorry if I'm missing something obvious.
Alex
Created by Alex Tamburino tambural Thanks @Mette ! This is very helpful!
Best,
Alex The provided BAM files contain both aligned and unmapped reads. If you want access to a set of fastq that were generated from those files, see the rnaSeqReprocessing study. That study reprocessed data from the MayoRNAseq, the ROSMAP, and MSBB studies. See this query for the [MayoRNAseq portion of the files](https://adknowledgeportal.synapse.org/Explore/Data?QueryWrapper0=%7B%22sql%22%3A%22SELECT%20*%20FROM%20syn11346063%22%2C%22limit%22%3A25%2C%22offset%22%3A0%2C%22selectedFacets%22%3A%5B%7B%22concreteType%22%3A%22org.sagebionetworks.repo.model.table.FacetColumnValuesRequest%22%2C%22columnName%22%3A%22study%22%2C%22facetValues%22%3A%5B%22rnaSeqReprocessing%22%5D%7D%2C%7B%22concreteType%22%3A%22org.sagebionetworks.repo.model.table.FacetColumnValuesRequest%22%2C%22columnName%22%3A%22dataType%22%2C%22facetValues%22%3A%5B%22geneExpression%22%5D%7D%2C%7B%22concreteType%22%3A%22org.sagebionetworks.repo.model.table.FacetColumnValuesRequest%22%2C%22columnName%22%3A%22fileFormat%22%2C%22facetValues%22%3A%5B%22fastq%22%5D%7D%2C%7B%22concreteType%22%3A%22org.sagebionetworks.repo.model.table.FacetColumnValuesRequest%22%2C%22columnName%22%3A%22specimenIdSource%22%2C%22facetValues%22%3A%5B%22MayoRNAseq%22%5D%7D%5D%7D). Click on the 'Study' link for any of the files for more information about the rnaSeqReprocessing study