Hello, I was exploring the RNAseq data for the HDAC1-cKOBrain study and noticed that the metadata covariates file (syn6037590) and the processed gene counts file (syn6037913) do not match. In the metadata covariates file as well as the Bam files, the ids start at 1 while in the processed gene and isoform counts file the IDs start at 0. How does the processed and raw data map to the covariates file? It looks like the numbers were just shifted by 1 but wanted to confirm. Thank you, Joe R

Created by Joseph Receveur jpreceveur
Hi Joe, thanks for catching this! I suspect that you are right and the counts file IDs were just shifted by 1, but I can't be 100% sure. This is one of our older studies but I see that the files were uploaded by @gaofan83 -- perhaps he can provide more information on the sampleID discrepancies?

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