Dear BraTS team,
I have placed all segmented outputs (.nii.gz format) in a directory and then compressing the directory as .tar.gz , then uploaded here.
The encountered error in the log file is,"
STDERR: 2021-08-02T22:58:14.466533889Z 7f7c3083c323 2021-08-02 22:58:14,466 MainThread INFO cwltool: Resolved '/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/brats-dream-challenge-infra-main/validation-phase-workflow.cwl' to 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/brats-dream-challenge-infra-main/validation-phase-workflow.cwl'
STDERR: 2021-08-02T22:58:17.476146097Z 7f7c3083c323 2021-08-02 22:58:17,475 MainThread WARNING cwltool: Workflow checker warning:
STDERR: 2021-08-02T22:58:17.476185981Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:42:9: Source 'filepath' of type
STDERR: 2021-08-02T22:58:17.476190551Z ["null", "File"] may be
STDERR: 2021-08-02T22:58:17.476194472Z incompatible
STDERR: 2021-08-02T22:58:17.476198019Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:62:9: with sink 'input_file' of
STDERR: 2021-08-02T22:58:17.476201359Z type "File"
STDERR: 2021-08-02T22:58:17.476205025Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:42:9: Source 'filepath' of type
STDERR: 2021-08-02T22:58:17.476208184Z ["null", "File"] may be
STDERR: 2021-08-02T22:58:17.476211581Z incompatible
STDERR: 2021-08-02T22:58:17.476214576Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:122:9: with sink 'input_file' of
STDERR: 2021-08-02T22:58:17.476217731Z type "File"
STDERR: 2021-08-02T22:58:19.302888567Z 7f7c3083c323 2021-08-02 22:58:19,302 MainThread INFO toil: Running Toil version 4.1.0-5ad5e77d98e1456b4f70f5b00e688a43cdce2ebe.
STDERR: 2021-08-02T22:58:20.408515806Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmpxvzzxqsa/worker_log.txt
STDERR: 2021-08-02T22:58:20.689779757Z 7f7c3083c323 2021-08-02 22:58:20,689 MainThread INFO toil.leader: 0 jobs are running, 0 jobs are issued and waiting to run
STDERR: 2021-08-02T22:58:20.690559771Z 7f7c3083c323 2021-08-02 22:58:20,690 MainThread INFO toil.leader: Issued job 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/get_submission.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_get_submission.cwl/instance-d5prkwgk with job batch system ID: 1 and cores: 1, disk: 1.0 G, and memory: 100.0 M
STDERR: 2021-08-02T22:58:20.690773799Z 7f7c3083c323 2021-08-02 22:58:20,690 MainThread INFO toil.leader: Issued job 'https://raw.githubusercontent.com/Sage-Bionetworks-Workflows/cwl-tool-synapseclient/v1.4/cwl/synapse-get-tool.cwl#synapse-get' synapse kind-https_raw.githubusercontent.com_Sage-Bionetworks-Workflows_cwl-tool-synapseclient_v1.4_cwl_synapse-get-tool.cwl_synapse-get/instance-6o3cnmtr with job batch system ID: 2 and cores: 1, disk: 1.0 G, and memory: 100.0 M
STDERR: 2021-08-02T22:58:21.780591841Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmprhvk4k2g/worker_log.txt
STDERR: 2021-08-02T22:58:21.844677797Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmpr6jw4jfl/worker_log.txt
STDERR: 2021-08-02T22:58:25.318461772Z 7f7c3083c323 2021-08-02 22:58:25,316 MainThread INFO toil.leader: Job ended: 'https://raw.githubusercontent.com/Sage-Bionetworks-Workflows/cwl-tool-synapseclient/v1.4/cwl/synapse-get-tool.cwl#synapse-get' synapse kind-https_raw.githubusercontent.com_Sage-Bionetworks-Workflows_cwl-tool-synapseclient_v1.4_cwl_synapse-get-tool.cwl_synapse-get/instance-6o3cnmtr
STDERR: 2021-08-02T22:58:25.459237943Z 7f7c3083c323 2021-08-02 22:58:25,459 MainThread INFO toil.leader: Job ended: 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/get_submission.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_get_submission.cwl/instance-d5prkwgk
STDERR: 2021-08-02T22:58:25.459923365Z 7f7c3083c323 2021-08-02 22:58:25,459 MainThread INFO toil.leader: Issued job 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/brats-dream-challenge-infra-main/validate.cwl' validate.py kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_eda7095d-1091-464b-9749-1eaa47db3034_brats-dream-challenge-infra-main_validate.cwl/instance-ghb6_x2m with job batch system ID: 3 and cores: 1, disk: 1.0 G, and memory: 100.0 M
STDERR: 2021-08-02T22:58:26.182659403Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/worker_log.txt
STDERR: 2021-08-02T22:58:27.571837995Z 7f7c3083c323 2021-08-02 22:58:27,571 MainThread INFO toil.leader: Job ended: 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/brats-dream-challenge-infra-main/validate.cwl' validate.py kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_eda7095d-1091-464b-9749-1eaa47db3034_brats-dream-challenge-infra-main_validate.cwl/instance-ghb6_x2m
STDERR: 2021-08-02T22:58:27.572344196Z 7f7c3083c323 2021-08-02 22:58:27,572 MainThread WARNING toil.leader: The job seems to have left a log file, indicating failure: 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/brats-dream-challenge-infra-main/validate.cwl' validate.py kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_eda7095d-1091-464b-9749-1eaa47db3034_brats-dream-challenge-infra-main_validate.cwl/instance-ghb6_x2m
STDERR: 2021-08-02T22:58:27.572625962Z 7f7c3083c323 2021-08-02 22:58:27,572 MainThread WARNING toil.leader: Log from job kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_eda7095d-1091-464b-9749-1eaa47db3034_brats-dream-challenge-infra-main_validate.cwl/instance-ghb6_x2m follows:
STDERR: 2021-08-02T22:58:27.572636230Z =========>
STDERR: 2021-08-02T22:58:27.572640130Z INFO:toil.worker:---TOIL WORKER OUTPUT LOG---
STDERR: 2021-08-02T22:58:27.572643467Z INFO:toil:Running Toil version 4.1.0-5ad5e77d98e1456b4f70f5b00e688a43cdce2ebe.
STDERR: 2021-08-02T22:58:27.572647241Z [job validate.cwl] Skipping Docker software container '--memory' limit despite presence of ResourceRequirement with ramMin and/or ramMax setting. Consider running with --strict-memory-limit for increased portability assurance.
STDERR: 2021-08-02T22:58:27.572662943Z WARNING:cwltool:[job validate.cwl] Skipping Docker software container '--memory' limit despite presence of ResourceRequirement with ramMin and/or ramMax setting. Consider running with --strict-memory-limit for increased portability assurance.
STDERR: 2021-08-02T22:58:27.572666921Z [job validate.cwl] /var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tqim0sjn7/tmp-out_27jx2sk$ docker \
STDERR: 2021-08-02T22:58:27.572670956Z run \
STDERR: 2021-08-02T22:58:27.572673937Z -i \
STDERR: 2021-08-02T22:58:27.572677139Z --mount=type=bind,source=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tqim0sjn7/tmp-out_27jx2sk,target=/ZVUwcp \
STDERR: 2021-08-02T22:58:27.572681107Z --mount=type=bind,source=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tz3xvo7_bw68fn6wm,target=/tmp \
STDERR: 2021-08-02T22:58:27.572685523Z --mount=type=bind,source=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tmpigk4fjps.tmp,target=/var/lib/cwl/stg1826ef54-854e-4d8a-9b15-f3e2584b4ad1/submission-9712991,readonly \
STDERR: 2021-08-02T22:58:27.572689958Z --mount=type=bind,source=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tmplg34vtex.tmp,target=/var/lib/cwl/stg98f6766d-ecca-495e-b195-fb0feed361f7/RSNA_ASNR_MICCAI_BraTS2021_ValidationGT.zip,readonly \
STDERR: 2021-08-02T22:58:27.572694352Z --workdir=/ZVUwcp \
STDERR: 2021-08-02T22:58:27.572697626Z --read-only=true \
STDERR: 2021-08-02T22:58:27.572701037Z --user=0:0 \
STDERR: 2021-08-02T22:58:27.572704359Z --rm \
STDERR: 2021-08-02T22:58:27.572707614Z --env=TMPDIR=/tmp \
STDERR: 2021-08-02T22:58:27.572710803Z --env=HOME=/ZVUwcp \
STDERR: 2021-08-02T22:58:27.572714110Z --cidfile=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tz3xvo7_b_g3mmhte/20210802225826-255483.cid \
STDERR: 2021-08-02T22:58:27.572718367Z docker.synapse.org/syn25829070/scoring:v2 \
STDERR: 2021-08-02T22:58:27.572721891Z validate.py \
STDERR: 2021-08-02T22:58:27.572724949Z -p \
STDERR: 2021-08-02T22:58:27.572728147Z /var/lib/cwl/stg1826ef54-854e-4d8a-9b15-f3e2584b4ad1/submission-9712991 \
STDERR: 2021-08-02T22:58:27.572731394Z -g \
STDERR: 2021-08-02T22:58:27.572734473Z /var/lib/cwl/stg98f6766d-ecca-495e-b195-fb0feed361f7/RSNA_ASNR_MICCAI_BraTS2021_ValidationGT.zip \
STDERR: 2021-08-02T22:58:27.572741101Z -e \
STDERR: 2021-08-02T22:58:27.572744259Z org.sagebionetworks.repo.model.FileEntity \
STDERR: 2021-08-02T22:58:27.572747203Z -o \
STDERR: 2021-08-02T22:58:27.572750287Z results.json
STDERR: 2021-08-02T22:58:27.572753388Z INFO:cwltool:[job validate.cwl] /var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tqim0sjn7/tmp-out_27jx2sk$ docker \
STDERR: 2021-08-02T22:58:27.572757670Z run \
STDERR: 2021-08-02T22:58:27.572761015Z -i \
STDERR: 2021-08-02T22:58:27.572764036Z --mount=type=bind,source=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tqim0sjn7/tmp-out_27jx2sk,target=/ZVUwcp \
STDERR: 2021-08-02T22:58:27.572821781Z --mount=type=bind,source=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tz3xvo7_bw68fn6wm,target=/tmp \
STDERR: 2021-08-02T22:58:27.572828695Z --mount=type=bind,source=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tmpigk4fjps.tmp,target=/var/lib/cwl/stg1826ef54-854e-4d8a-9b15-f3e2584b4ad1/submission-9712991,readonly \
STDERR: 2021-08-02T22:58:27.572832843Z --mount=type=bind,source=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tmplg34vtex.tmp,target=/var/lib/cwl/stg98f6766d-ecca-495e-b195-fb0feed361f7/RSNA_ASNR_MICCAI_BraTS2021_ValidationGT.zip,readonly \
STDERR: 2021-08-02T22:58:27.572836939Z --workdir=/ZVUwcp \
STDERR: 2021-08-02T22:58:27.572839241Z --read-only=true \
STDERR: 2021-08-02T22:58:27.572841732Z --user=0:0 \
STDERR: 2021-08-02T22:58:27.572843847Z --rm \
STDERR: 2021-08-02T22:58:27.572846771Z --env=TMPDIR=/tmp \
STDERR: 2021-08-02T22:58:27.572849816Z --env=HOME=/ZVUwcp \
STDERR: 2021-08-02T22:58:27.572853266Z --cidfile=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tz3xvo7_b_g3mmhte/20210802225826-255483.cid \
STDERR: 2021-08-02T22:58:27.572857233Z docker.synapse.org/syn25829070/scoring:v2 \
STDERR: 2021-08-02T22:58:27.572860447Z validate.py \
STDERR: 2021-08-02T22:58:27.572863568Z -p \
STDERR: 2021-08-02T22:58:27.572866716Z /var/lib/cwl/stg1826ef54-854e-4d8a-9b15-f3e2584b4ad1/submission-9712991 \
STDERR: 2021-08-02T22:58:27.572870307Z -g \
STDERR: 2021-08-02T22:58:27.572878604Z /var/lib/cwl/stg98f6766d-ecca-495e-b195-fb0feed361f7/RSNA_ASNR_MICCAI_BraTS2021_ValidationGT.zip \
STDERR: 2021-08-02T22:58:27.572881203Z -e \
STDERR: 2021-08-02T22:58:27.572883408Z org.sagebionetworks.repo.model.FileEntity \
STDERR: 2021-08-02T22:58:27.572885553Z -o \
STDERR: 2021-08-02T22:58:27.572887585Z results.json
STDERR: 2021-08-02T22:58:27.572889712Z Traceback (most recent call last):
STDERR: 2021-08-02T22:58:27.572891956Z File "/usr/local/lib/python3.6/tarfile.py", line 188, in nti
STDERR: 2021-08-02T22:58:27.572894308Z s = nts(s, "ascii", "strict")
STDERR: 2021-08-02T22:58:27.572896659Z File "/usr/local/lib/python3.6/tarfile.py", line 172, in nts
STDERR: 2021-08-02T22:58:27.572899147Z return s.decode(encoding, errors)
STDERR: 2021-08-02T22:58:27.572901477Z UnicodeDecodeError: 'ascii' codec can't decode byte 0xbc in position 1: ordinal not in range(128)
STDERR: 2021-08-02T22:58:27.572903827Z
STDERR: 2021-08-02T22:58:27.572906000Z During handling of the above exception, another exception occurred:
STDERR: 2021-08-02T22:58:27.572908236Z
STDERR: 2021-08-02T22:58:27.572910266Z Traceback (most recent call last):
STDERR: 2021-08-02T22:58:27.572912852Z File "/usr/local/lib/python3.6/tarfile.py", line 2294, in next
STDERR: 2021-08-02T22:58:27.572915102Z tarinfo = self.tarinfo.fromtarfile(self)
STDERR: 2021-08-02T22:58:27.572917284Z File "/usr/local/lib/python3.6/tarfile.py", line 1090, in fromtarfile
STDERR: 2021-08-02T22:58:27.572919597Z obj = cls.frombuf(buf, tarfile.encoding, tarfile.errors)
STDERR: 2021-08-02T22:58:27.572921780Z File "/usr/local/lib/python3.6/tarfile.py", line 1032, in frombuf
STDERR: 2021-08-02T22:58:27.572924050Z chksum = nti(buf[148:156])
STDERR: 2021-08-02T22:58:27.572926177Z File "/usr/local/lib/python3.6/tarfile.py", line 191, in nti
STDERR: 2021-08-02T22:58:27.572928491Z raise InvalidHeaderError("invalid header")
STDERR: 2021-08-02T22:58:27.572930693Z tarfile.InvalidHeaderError: invalid header
STDERR: 2021-08-02T22:58:27.572933373Z
STDERR: 2021-08-02T22:58:27.572936371Z During handling of the above exception, another exception occurred:
STDERR: 2021-08-02T22:58:27.572939596Z
STDERR: 2021-08-02T22:58:27.572942533Z Traceback (most recent call last):
STDERR: 2021-08-02T22:58:27.572945598Z File "/usr/local/bin/validate.py", line 130, in
STDERR: 2021-08-02T22:58:27.572949132Z main()
STDERR: 2021-08-02T22:58:27.572952260Z File "/usr/local/bin/validate.py", line 108, in main
STDERR: 2021-08-02T22:58:27.572955216Z preds = get_images(args.predictions_file)
STDERR: 2021-08-02T22:58:27.572957372Z File "/usr/local/bin/validate.py", line 36, in get_images
STDERR: 2021-08-02T22:58:27.572959567Z with tarfile.TarFile(submission) as tar_ref:
STDERR: 2021-08-02T22:58:27.572964286Z File "/usr/local/lib/python3.6/tarfile.py", line 1479, in __init__
STDERR: 2021-08-02T22:58:27.572966643Z self.firstmember = self.next()
STDERR: 2021-08-02T22:58:27.572968757Z File "/usr/local/lib/python3.6/tarfile.py", line 2306, in next
STDERR: 2021-08-02T22:58:27.572970960Z raise ReadError(str(e))
STDERR: 2021-08-02T22:58:27.572973080Z tarfile.ReadError: invalid header
STDERR: 2021-08-02T22:58:27.572975197Z [job validate.cwl] Max memory used: 0MiB
STDERR: 2021-08-02T22:58:27.572977314Z INFO:cwltool:[job validate.cwl] Max memory used: 0MiB
STDERR: 2021-08-02T22:58:27.572979514Z [job validate.cwl] Job error:
STDERR: 2021-08-02T22:58:27.572981707Z ("Error collecting output for parameter 'results':\nbrats-dream-challenge-infra-main/validate.cwl:38:7: Did not find output file with glob pattern: '['results.json']'", {})
STDERR: 2021-08-02T22:58:27.572984315Z ERROR:cwltool:[job validate.cwl] Job error:
STDERR: 2021-08-02T22:58:27.572986528Z ("Error collecting output for parameter 'results':\nbrats-dream-challenge-infra-main/validate.cwl:38:7: Did not find output file with glob pattern: '['results.json']'", {})
STDERR: 2021-08-02T22:58:27.572989008Z [job validate.cwl] completed permanentFail
STDERR: 2021-08-02T22:58:27.572991147Z WARNING:cwltool:[job validate.cwl] completed permanentFail
STDERR: 2021-08-02T22:58:27.572993313Z Traceback (most recent call last):
STDERR: 2021-08-02T22:58:27.572995431Z File "/usr/local/lib/python3.6/site-packages/toil/worker.py", line 366, in workerScript
STDERR: 2021-08-02T22:58:27.572997749Z job._runner(jobGraph=jobGraph, jobStore=jobStore, fileStore=fileStore, defer=defer)
STDERR: 2021-08-02T22:58:27.572999994Z File "/usr/local/lib/python3.6/site-packages/toil/job.py", line 1392, in _runner
STDERR: 2021-08-02T22:58:27.573002556Z returnValues = self._run(jobGraph, fileStore)
STDERR: 2021-08-02T22:58:27.573004728Z File "/usr/local/lib/python3.6/site-packages/toil/job.py", line 1329, in _run
STDERR: 2021-08-02T22:58:27.573006958Z return self.run(fileStore)
STDERR: 2021-08-02T22:58:27.573009043Z File "/usr/local/lib/python3.6/site-packages/toil/cwl/cwltoil.py", line 937, in run
STDERR: 2021-08-02T22:58:27.573011322Z raise cwltool.errors.WorkflowException(status)
STDERR: 2021-08-02T22:58:27.573013449Z cwltool.errors.WorkflowException: permanentFail
STDERR: 2021-08-02T22:58:27.573016262Z ERROR:toil.worker:Exiting the worker because of a failed job on host 7f7c3083c323
STDERR: 2021-08-02T22:58:27.573020092Z WARNING:toil.jobGraph:Due to failure we are reducing the remaining retry count of job 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/brats-dream-challenge-infra-main/validate.cwl' validate.py kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_eda7095d-1091-464b-9749-1eaa47db3034_brats-dream-challenge-infra-main_validate.cwl/instance-ghb6_x2m with ID kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_eda7095d-1091-464b-9749-1eaa47db3034_brats-dream-challenge-infra-main_validate.cwl/instance-ghb6_x2m to 0
STDERR: 2021-08-02T22:58:27.573027662Z <=========
STDERR: 2021-08-02T22:58:27.573628962Z 7f7c3083c323 2021-08-02 22:58:27,573 MainThread WARNING toil.leader: Job 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/brats-dream-challenge-infra-main/validate.cwl' validate.py kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_eda7095d-1091-464b-9749-1eaa47db3034_brats-dream-challenge-infra-main_validate.cwl/instance-ghb6_x2m with ID kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_eda7095d-1091-464b-9749-1eaa47db3034_brats-dream-challenge-infra-main_validate.cwl/instance-ghb6_x2m is completely failed
STDERR: 2021-08-02T22:58:35.371143133Z 7f7c3083c323 2021-08-02 22:58:35,359 MainThread INFO toil.leader: Finished toil run with 4 failed jobs.
STDERR: 2021-08-02T22:58:35.371176322Z 7f7c3083c323 2021-08-02 22:58:35,359 MainThread INFO toil.leader: Failed jobs at end of the run: 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/get_submission.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_get_submission.cwl/instance-d5prkwgk 'https://raw.githubusercontent.com/Sage-Bionetworks-Workflows/cwl-tool-synapseclient/v1.4/cwl/synapse-get-tool.cwl#synapse-get' synapse kind-https_raw.githubusercontent.com_Sage-Bionetworks-Workflows_cwl-tool-synapseclient_v1.4_cwl_synapse-get-tool.cwl_synapse-get/instance-6o3cnmtr 'CWLWorkflow' kind-CWLWorkflow/instance-ojcce7b8 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/brats-dream-challenge-infra-main/validate.cwl' validate.py kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_eda7095d-1091-464b-9749-1eaa47db3034_brats-dream-challenge-infra-main_validate.cwl/instance-ghb6_x2m
STDERR: 2021-08-02T22:58:35.385750502Z Traceback (most recent call last):
STDERR: 2021-08-02T22:58:35.385780101Z File "/usr/local/bin/toil-cwl-runner", line 8, in
STDERR: 2021-08-02T22:58:35.385784589Z sys.exit(main())
STDERR: 2021-08-02T22:58:35.385787915Z File "/usr/local/lib/python3.6/site-packages/toil/cwl/cwltoil.py", line 1691, in main
STDERR: 2021-08-02T22:58:35.385792269Z outobj = toil.start(wf1)
STDERR: 2021-08-02T22:58:35.385795665Z File "/usr/local/lib/python3.6/site-packages/toil/common.py", line 829, in start
STDERR: 2021-08-02T22:58:35.385799261Z return self._runMainLoop(rootJobGraph)
STDERR: 2021-08-02T22:58:35.385802509Z File "/usr/local/lib/python3.6/site-packages/toil/common.py", line 1120, in _runMainLoop
STDERR: 2021-08-02T22:58:35.385806021Z jobCache=self._jobCache).run()
STDERR: 2021-08-02T22:58:35.385809121Z File "/usr/local/lib/python3.6/site-packages/toil/leader.py", line 269, in run
STDERR: 2021-08-02T22:58:35.385812333Z raise FailedJobsException(self.config.jobStore, self.toilState.totalFailedJobs, self.jobStore)
STDERR: 2021-08-02T22:58:35.385815957Z toil.leader.FailedJobsException: The job store 'file:/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/tmp73s3ovmi' contains 4 failed jobs: 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/get_submission.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_get_submission.cwl/instance-d5prkwgk, 'https://raw.githubusercontent.com/Sage-Bionetworks-Workflows/cwl-tool-synapseclient/v1.4/cwl/synapse-get-tool.cwl#synapse-get' synapse kind-https_raw.githubusercontent.com_Sage-Bionetworks-Workflows_cwl-tool-synapseclient_v1.4_cwl_synapse-get-tool.cwl_synapse-get/instance-6o3cnmtr, 'CWLWorkflow' kind-CWLWorkflow/instance-ojcce7b8, 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/brats-dream-challenge-infra-main/validate.cwl' validate.py kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_eda7095d-1091-464b-9749-1eaa47db3034_brats-dream-challenge-infra-main_validate.cwl/instance-ghb6_x2m
STDERR: 2021-08-02T22:58:35.385848363Z Log from job 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/brats-dream-challenge-infra-main/validate.cwl' validate.py kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_eda7095d-1091-464b-9749-1eaa47db3034_brats-dream-challenge-infra-main_validate.cwl/instance-ghb6_x2m follows:
STDERR: 2021-08-02T22:58:35.385852663Z =========>
STDERR: 2021-08-02T22:58:35.385855750Z INFO:toil.worker:---TOIL WORKER OUTPUT LOG---
STDERR: 2021-08-02T22:58:35.385859102Z INFO:toil:Running Toil version 4.1.0-5ad5e77d98e1456b4f70f5b00e688a43cdce2ebe.
STDERR: 2021-08-02T22:58:35.385862706Z [job validate.cwl] Skipping Docker software container '--memory' limit despite presence of ResourceRequirement with ramMin and/or ramMax setting. Consider running with --strict-memory-limit for increased portability assurance.
STDERR: 2021-08-02T22:58:35.385866694Z WARNING:cwltool:[job validate.cwl] Skipping Docker software container '--memory' limit despite presence of ResourceRequirement with ramMin and/or ramMax setting. Consider running with --strict-memory-limit for increased portability assurance.
STDERR: 2021-08-02T22:58:35.385870606Z [job validate.cwl] /var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tqim0sjn7/tmp-out_27jx2sk$ docker \
STDERR: 2021-08-02T22:58:35.385874534Z run \
STDERR: 2021-08-02T22:58:35.385877833Z -i \
STDERR: 2021-08-02T22:58:35.385880903Z --mount=type=bind,source=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tqim0sjn7/tmp-out_27jx2sk,target=/ZVUwcp \
STDERR: 2021-08-02T22:58:35.385885028Z --mount=type=bind,source=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tz3xvo7_bw68fn6wm,target=/tmp \
STDERR: 2021-08-02T22:58:35.385889351Z --mount=type=bind,source=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tmpigk4fjps.tmp,target=/var/lib/cwl/stg1826ef54-854e-4d8a-9b15-f3e2584b4ad1/submission-9712991,readonly \
STDERR: 2021-08-02T22:58:35.385962010Z --mount=type=bind,source=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tmplg34vtex.tmp,target=/var/lib/cwl/stg98f6766d-ecca-495e-b195-fb0feed361f7/RSNA_ASNR_MICCAI_BraTS2021_ValidationGT.zip,readonly \
STDERR: 2021-08-02T22:58:35.385971443Z --workdir=/ZVUwcp \
STDERR: 2021-08-02T22:58:35.385985802Z --read-only=true \
STDERR: 2021-08-02T22:58:35.385989001Z --user=0:0 \
STDERR: 2021-08-02T22:58:35.385992051Z --rm \
STDERR: 2021-08-02T22:58:35.385995151Z --env=TMPDIR=/tmp \
STDERR: 2021-08-02T22:58:35.385998387Z --env=HOME=/ZVUwcp \
STDERR: 2021-08-02T22:58:35.386001959Z --cidfile=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tz3xvo7_b_g3mmhte/20210802225826-255483.cid \
STDERR: 2021-08-02T22:58:35.386005776Z docker.synapse.org/syn25829070/scoring:v2 \
STDERR: 2021-08-02T22:58:35.386008961Z validate.py \
STDERR: 2021-08-02T22:58:35.386011983Z -p \
STDERR: 2021-08-02T22:58:35.386015107Z /var/lib/cwl/stg1826ef54-854e-4d8a-9b15-f3e2584b4ad1/submission-9712991 \
STDERR: 2021-08-02T22:58:35.386018479Z -g \
STDERR: 2021-08-02T22:58:35.386021610Z /var/lib/cwl/stg98f6766d-ecca-495e-b195-fb0feed361f7/RSNA_ASNR_MICCAI_BraTS2021_ValidationGT.zip \
STDERR: 2021-08-02T22:58:35.386025003Z -e \
STDERR: 2021-08-02T22:58:35.386028050Z org.sagebionetworks.repo.model.FileEntity \
STDERR: 2021-08-02T22:58:35.386031216Z -o \
STDERR: 2021-08-02T22:58:35.386034187Z results.json
STDERR: 2021-08-02T22:58:35.386037391Z INFO:cwltool:[job validate.cwl] /var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tqim0sjn7/tmp-out_27jx2sk$ docker \
STDERR: 2021-08-02T22:58:35.386041408Z run \
STDERR: 2021-08-02T22:58:35.386044455Z -i \
STDERR: 2021-08-02T22:58:35.386047660Z --mount=type=bind,source=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tqim0sjn7/tmp-out_27jx2sk,target=/ZVUwcp \
STDERR: 2021-08-02T22:58:35.386052028Z --mount=type=bind,source=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tz3xvo7_bw68fn6wm,target=/tmp \
STDERR: 2021-08-02T22:58:35.386056862Z --mount=type=bind,source=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tmpigk4fjps.tmp,target=/var/lib/cwl/stg1826ef54-854e-4d8a-9b15-f3e2584b4ad1/submission-9712991,readonly \
STDERR: 2021-08-02T22:58:35.386061052Z --mount=type=bind,source=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tmplg34vtex.tmp,target=/var/lib/cwl/stg98f6766d-ecca-495e-b195-fb0feed361f7/RSNA_ASNR_MICCAI_BraTS2021_ValidationGT.zip,readonly \
STDERR: 2021-08-02T22:58:35.386068036Z --workdir=/ZVUwcp \
STDERR: 2021-08-02T22:58:35.386071216Z --read-only=true \
STDERR: 2021-08-02T22:58:35.386074263Z --user=0:0 \
STDERR: 2021-08-02T22:58:35.386077340Z --rm \
STDERR: 2021-08-02T22:58:35.386080457Z --env=TMPDIR=/tmp \
STDERR: 2021-08-02T22:58:35.386083516Z --env=HOME=/ZVUwcp \
STDERR: 2021-08-02T22:58:35.386086645Z --cidfile=/var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/node-a86c9358-63f2-4a8f-aa76-8be9e1833f89-16349ee66b573b0d6cff3dbc6912349f/tmp1c5znrjt/5a008d17-33e5-4823-a380-8bee12cd04b1/tz3xvo7_b_g3mmhte/20210802225826-255483.cid \
STDERR: 2021-08-02T22:58:35.386090640Z docker.synapse.org/syn25829070/scoring:v2 \
STDERR: 2021-08-02T22:58:35.386093983Z validate.py \
STDERR: 2021-08-02T22:58:35.386097240Z -p \
STDERR: 2021-08-02T22:58:35.386100452Z /var/lib/cwl/stg1826ef54-854e-4d8a-9b15-f3e2584b4ad1/submission-9712991 \
STDERR: 2021-08-02T22:58:35.386103929Z -g \
STDERR: 2021-08-02T22:58:35.386107135Z /var/lib/cwl/stg98f6766d-ecca-495e-b195-fb0feed361f7/RSNA_ASNR_MICCAI_BraTS2021_ValidationGT.zip \
STDERR: 2021-08-02T22:58:35.386110617Z -e \
STDERR: 2021-08-02T22:58:35.386113730Z org.sagebionetworks.repo.model.FileEntity \
STDERR: 2021-08-02T22:58:35.386116844Z -o \
STDERR: 2021-08-02T22:58:35.386119821Z results.json
STDERR: 2021-08-02T22:58:35.386122901Z Traceback (most recent call last):
STDERR: 2021-08-02T22:58:35.386126132Z File "/usr/local/lib/python3.6/tarfile.py", line 188, in nti
STDERR: 2021-08-02T22:58:35.386129762Z s = nts(s, "ascii", "strict")
STDERR: 2021-08-02T22:58:35.386135427Z File "/usr/local/lib/python3.6/tarfile.py", line 172, in nts
STDERR: 2021-08-02T22:58:35.386138965Z return s.decode(encoding, errors)
STDERR: 2021-08-02T22:58:35.386142213Z UnicodeDecodeError: 'ascii' codec can't decode byte 0xbc in position 1: ordinal not in range(128)
STDERR: 2021-08-02T22:58:35.386145730Z
STDERR: 2021-08-02T22:58:35.386149010Z During handling of the above exception, another exception occurred:
STDERR: 2021-08-02T22:58:35.386152413Z
STDERR: 2021-08-02T22:58:35.386155560Z Traceback (most recent call last):
STDERR: 2021-08-02T22:58:35.386158564Z File "/usr/local/lib/python3.6/tarfile.py", line 2294, in next
STDERR: 2021-08-02T22:58:35.386162007Z tarinfo = self.tarinfo.fromtarfile(self)
STDERR: 2021-08-02T22:58:35.386165020Z File "/usr/local/lib/python3.6/tarfile.py", line 1090, in fromtarfile
STDERR: 2021-08-02T22:58:35.386204646Z obj = cls.frombuf(buf, tarfile.encoding, tarfile.errors)
STDERR: 2021-08-02T22:58:35.386209120Z File "/usr/local/lib/python3.6/tarfile.py", line 1032, in frombuf
STDERR: 2021-08-02T22:58:35.386216472Z chksum = nti(buf[148:156])
STDERR: 2021-08-02T22:58:35.386220031Z File "/usr/local/lib/python3.6/tarfile.py", line 191, in nti
STDERR: 2021-08-02T22:58:35.386223364Z raise InvalidHeaderError("invalid header")
STDERR: 2021-08-02T22:58:35.386226894Z tarfile.InvalidHeaderError: invalid header
STDERR: 2021-08-02T22:58:35.386230263Z
STDERR: 2021-08-02T22:58:35.386233443Z During handling of the above exception, another exception occurred:
STDERR: 2021-08-02T22:58:35.386236826Z
STDERR: 2021-08-02T22:58:35.386240076Z Traceback (most recent call last):
STDERR: 2021-08-02T22:58:35.386253978Z File "/usr/local/bin/validate.py", line 130, in
STDERR: 2021-08-02T22:58:35.386257468Z main()
STDERR: 2021-08-02T22:58:35.386260508Z File "/usr/local/bin/validate.py", line 108, in main
STDERR: 2021-08-02T22:58:35.386263748Z preds = get_images(args.predictions_file)
STDERR: 2021-08-02T22:58:35.386266886Z File "/usr/local/bin/validate.py", line 36, in get_images
STDERR: 2021-08-02T22:58:35.386270219Z with tarfile.TarFile(submission) as tar_ref:
STDERR: 2021-08-02T22:58:35.386273386Z File "/usr/local/lib/python3.6/tarfile.py", line 1479, in __init__
STDERR: 2021-08-02T22:58:35.386276788Z self.firstmember = self.next()
STDERR: 2021-08-02T22:58:35.386280095Z File "/usr/local/lib/python3.6/tarfile.py", line 2306, in next
STDERR: 2021-08-02T22:58:35.386283711Z raise ReadError(str(e))
STDERR: 2021-08-02T22:58:35.386286689Z tarfile.ReadError: invalid header
STDERR: 2021-08-02T22:58:35.386290134Z [job validate.cwl] Max memory used: 0MiB
STDERR: 2021-08-02T22:58:35.386293428Z INFO:cwltool:[job validate.cwl] Max memory used: 0MiB
STDERR: 2021-08-02T22:58:35.386296742Z [job validate.cwl] Job error:
STDERR: 2021-08-02T22:58:35.386299932Z ("Error collecting output for parameter 'results':\nbrats-dream-challenge-infra-main/validate.cwl:38:7: Did not find output file with glob pattern: '['results.json']'", {})
STDERR: 2021-08-02T22:58:35.386303744Z ERROR:cwltool:[job validate.cwl] Job error:
STDERR: 2021-08-02T22:58:35.386306954Z ("Error collecting output for parameter 'results':\nbrats-dream-challenge-infra-main/validate.cwl:38:7: Did not find output file with glob pattern: '['results.json']'", {})
STDERR: 2021-08-02T22:58:35.386310585Z [job validate.cwl] completed permanentFail
STDERR: 2021-08-02T22:58:35.386313718Z WARNING:cwltool:[job validate.cwl] completed permanentFail
STDERR: 2021-08-02T22:58:35.386316919Z Traceback (most recent call last):
STDERR: 2021-08-02T22:58:35.386320038Z File "/usr/local/lib/python3.6/site-packages/toil/worker.py", line 366, in workerScript
STDERR: 2021-08-02T22:58:35.386323376Z job._runner(jobGraph=jobGraph, jobStore=jobStore, fileStore=fileStore, defer=defer)
STDERR: 2021-08-02T22:58:35.386326711Z File "/usr/local/lib/python3.6/site-packages/toil/job.py", line 1392, in _runner
STDERR: 2021-08-02T22:58:35.386332858Z returnValues = self._run(jobGraph, fileStore)
STDERR: 2021-08-02T22:58:35.386336164Z File "/usr/local/lib/python3.6/site-packages/toil/job.py", line 1329, in _run
STDERR: 2021-08-02T22:58:35.386339506Z return self.run(fileStore)
STDERR: 2021-08-02T22:58:35.386343184Z File "/usr/local/lib/python3.6/site-packages/toil/cwl/cwltoil.py", line 937, in run
STDERR: 2021-08-02T22:58:35.386346676Z raise cwltool.errors.WorkflowException(status)
STDERR: 2021-08-02T22:58:35.386349999Z cwltool.errors.WorkflowException: permanentFail
STDERR: 2021-08-02T22:58:35.386353301Z ERROR:toil.worker:Exiting the worker because of a failed job on host 7f7c3083c323
STDERR: 2021-08-02T22:58:35.386356671Z WARNING:toil.jobGraph:Due to failure we are reducing the remaining retry count of job 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/eda7095d-1091-464b-9749-1eaa47db3034/brats-dream-challenge-infra-main/validate.cwl' validate.py kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_eda7095d-1091-464b-9749-1eaa47db3034_brats-dream-challenge-infra-main_validate.cwl/instance-ghb6_x2m with ID kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_eda7095d-1091-464b-9749-1eaa47db3034_brats-dream-challenge-infra-main_validate.cwl/instance-ghb6_x2m to 0
STDERR: 2021-08-02T22:58:35.386361551Z <=========
"
Could you kindly instruct how to do the process?
Created by Saruar Alam saruarlive HI @ujjwalbaid , my submission status is INVALID but no log file is generated. The log folder does not contain any file.
Kindly sort it out.
Thank you @saruarlive , my image size is already (240, 240, 155) and pixel values are 0, 1, 2, 4, let me try with the data type numpy.uint8 @khue couple of things you can try, saving image size as (240, 240, 155) having pixel values 0, 1, 2, 4, and keeping data type numpy.uint8, etc. Do you have any updates? You need to wait if there are submissions before yours in the queue. Hi, @saruarlive
How long did you take to see the submission in the leaderboard? Did it show the results immediately or you wait for a couple of hours? The uploaded image shape is (240, 240, 155). Do they accept image shapes like (3, 240, 240, 155)? Hi, saruarlive
I see your name on the leaderboard. Can I ask about the img shape for validation. Is it (240, 240, 155) or (3, 240, 240, 155)?
Thank you
Drop files to upload
Submission Evaluation INVALID, getting errors page is loading…