Dear Organizers,
i got this error. Please help me to solve it!
ID submission: 9713962
STDERR: 2021-08-11T05:06:27.551847966Z f2b823dc4166 2021-08-11 05:06:27,551 MainThread INFO cwltool: Resolved '/var/lib/docker/volumes/workflow_orchestrator_shared/_data/d1bd24b1-0ea5-4266-bd0e-71126845c1b2/brats-dream-challenge-infra-main/validation-phase-workflow.cwl' to 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/d1bd24b1-0ea5-4266-bd0e-71126845c1b2/brats-dream-challenge-infra-main/validation-phase-workflow.cwl'
STDERR: 2021-08-11T05:06:29.597011630Z Traceback (most recent call last):
STDERR: 2021-08-11T05:06:29.597060889Z File "/usr/local/bin/toil-cwl-runner", line 8, in
STDERR: 2021-08-11T05:06:29.597067895Z sys.exit(main())
STDERR: 2021-08-11T05:06:29.597071632Z File "/usr/local/lib/python3.6/site-packages/toil/cwl/cwltoil.py", line 1587, in main
STDERR: 2021-08-11T05:06:29.597075804Z loading_context, uri = cwltool.load_tool.resolve_and_validate_document(loading_context, workflowobj, uri)
STDERR: 2021-08-11T05:06:29.597079551Z File "/usr/local/lib/python3.6/site-packages/cwltool/load_tool.py", line 336, in resolve_and_validate_document
STDERR: 2021-08-11T05:06:29.597083688Z document_loader.resolve_all(workflowobj, fileuri)
STDERR: 2021-08-11T05:06:29.597087579Z File "/usr/local/lib/python3.6/site-packages/schema_salad/ref_resolver.py", line 1196, in resolve_all
STDERR: 2021-08-11T05:06:29.597091665Z strict_foreign_properties=strict_foreign_properties,
STDERR: 2021-08-11T05:06:29.597095251Z File "/usr/local/lib/python3.6/site-packages/schema_salad/ref_resolver.py", line 1422, in validate_links
STDERR: 2021-08-11T05:06:29.597099549Z raise errors[0]
STDERR: 2021-08-11T05:06:29.597103277Z schema_salad.exceptions.ValidationException: brats-dream-challenge-infra-main/validation-phase-workflow.cwl:32:1: checking field `steps`
STDERR: 2021-08-11T05:06:29.597123160Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:175:3: checking object
STDERR: 2021-08-11T05:06:29.597127094Z `brats-dream-challenge-infra-main/validation-phase-workflow.cwl#check_final_status`
STDERR: 2021-08-11T05:06:29.597131608Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:177:5: checking field `in`
STDERR: 2021-08-11T05:06:29.597135691Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:178:9: checking object
STDERR: 2021-08-11T05:06:29.597139871Z `brats-dream-challenge-infra-main/validation-phase-workflow.cwl#check_final_status/status`
STDERR: 2021-08-11T05:06:29.597144071Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:179:9: Field `source`
STDERR: 2021-08-11T05:06:29.597147606Z references unknown identifier
STDERR: 2021-08-11T05:06:29.597151740Z `file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/d1bd24b1-0ea5-4266-bd0e-71126845c1b2/brats-dream-challenge-infra-main/validation-phase-workflow.cwl#score/status`,
STDERR: 2021-08-11T05:06:29.597158624Z tried
STDERR: 2021-08-11T05:06:29.597162714Z file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/d1bd24b1-0ea5-4266-bd0e-71126845c1b2/brats-dream-challenge-infra-main/validation-phase-workflow.cwl#file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/d1bd24b1-0ea5-4266-bd0e-71126845c1b2/brats-dream-challenge-infra-main/validation-phase-workflow.cwl#score/status
STDERR: 2021-08-11T05:06:29.597181355Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:182:9: checking object
STDERR: 2021-08-11T05:06:29.597200262Z `brats-dream-challenge-infra-main/validation-phase-workflow.cwl#check_final_status/previous_email_finished`
STDERR: 2021-08-11T05:06:29.597204494Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:183:9: Field `source`
STDERR: 2021-08-11T05:06:29.597207916Z references unknown identifier
STDERR: 2021-08-11T05:06:29.597211934Z `file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/d1bd24b1-0ea5-4266-bd0e-71126845c1b2/brats-dream-challenge-infra-main/validation-phase-workflow.cwl#email_score/finished`,
STDERR: 2021-08-11T05:06:29.597216147Z tried
STDERR: 2021-08-11T05:06:29.597220369Z file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/d1bd24b1-0ea5-4266-bd0e-71126845c1b2/brats-dream-challenge-infra-main/validation-phase-workflow.cwl#file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/d1bd24b1-0ea5-4266-bd0e-71126845c1b2/brats-dream-challenge-infra-main/validation-phase-workflow.cwl#email_score/finished
Created by Duy Phuong Dao duyphuongcri @TecnmGTO ,
Your submission, 9714005, has an unrelated error to the above. Instead, your submission cannot be properly scored due to a mismatch in origin between your predictions and the references. Please [see here](https://www.synapse.org/#!Synapse:syn25829067/discussion/threadId=8214&replyId=25338) for some suggestions. Hi, @vchung I believe that I have the same error.
I receive this email. I do not know if I have errors in my submission.
Your submission (ID: 9714005) has encountered an error during scoring. Please ask a Challenge Organizer for more information regarding your submission, using Submission ID 9714005 as a reference number. Sincerely, Challenge Administrator. This error is similiar to the previous message. ¿Could you help me?, please!
STDERR: 2021-08-11T05:41:32.606488277Z c1ae3b84ca0b 2021-08-11 05:41:32,606 MainThread INFO cwltool: Resolved '/var/lib/docker/volumes/workflow_orchestrator_shared/_data/adff5722-1d04-4eb4-8f9d-2cd397f46fb5/brats-dream-challenge-infra-main/validation-phase-workflow.cwl' to 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/adff5722-1d04-4eb4-8f9d-2cd397f46fb5/brats-dream-challenge-infra-main/validation-phase-workflow.cwl'
STDERR: 2021-08-11T05:41:34.323326915Z Traceback (most recent call last):
STDERR: 2021-08-11T05:41:34.323360117Z File "/usr/local/bin/toil-cwl-runner", line 8, in
STDERR: 2021-08-11T05:41:34.323364846Z sys.exit(main())
STDERR: 2021-08-11T05:41:34.323368601Z File "/usr/local/lib/python3.6/site-packages/toil/cwl/cwltoil.py", line 1587, in main
STDERR: 2021-08-11T05:41:34.323372027Z loading_context, uri = cwltool.load_tool.resolve_and_validate_document(loading_context, workflowobj, uri)
STDERR: 2021-08-11T05:41:34.323375503Z File "/usr/local/lib/python3.6/site-packages/cwltool/load_tool.py", line 336, in resolve_and_validate_document
STDERR: 2021-08-11T05:41:34.323378871Z document_loader.resolve_all(workflowobj, fileuri)
STDERR: 2021-08-11T05:41:34.323382006Z File "/usr/local/lib/python3.6/site-packages/schema_salad/ref_resolver.py", line 1196, in resolve_all
STDERR: 2021-08-11T05:41:34.323385416Z strict_foreign_properties=strict_foreign_properties,
STDERR: 2021-08-11T05:41:34.323388721Z File "/usr/local/lib/python3.6/site-packages/schema_salad/ref_resolver.py", line 1422, in validate_links
STDERR: 2021-08-11T05:41:34.323391939Z raise errors[0]
STDERR: 2021-08-11T05:41:34.323395625Z schema_salad.exceptions.ValidationException: brats-dream-challenge-infra-main/validation-phase-workflow.cwl:32:1: checking field `steps`
STDERR: 2021-08-11T05:41:34.323398910Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:175:3: checking object
STDERR: 2021-08-11T05:41:34.323402520Z `brats-dream-challenge-infra-main/validation-phase-workflow.cwl#check_final_status`
STDERR: 2021-08-11T05:41:34.323405891Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:177:5: checking field `in`
STDERR: 2021-08-11T05:41:34.323409221Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:178:9: checking object
STDERR: 2021-08-11T05:41:34.323412620Z `brats-dream-challenge-infra-main/validation-phase-workflow.cwl#check_final_status/status`
STDERR: 2021-08-11T05:41:34.323416086Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:179:9: Field `source`
STDERR: 2021-08-11T05:41:34.323419537Z references unknown identifier
STDERR: 2021-08-11T05:41:34.323424034Z `file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/adff5722-1d04-4eb4-8f9d-2cd397f46fb5/brats-dream-challenge-infra-main/validation-phase-workflow.cwl#score/status`,
STDERR: 2021-08-11T05:41:34.323428553Z tried
STDERR: 2021-08-11T05:41:34.323431901Z file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/adff5722-1d04-4eb4-8f9d-2cd397f46fb5/brats-dream-challenge-infra-main/validation-phase-workflow.cwl#file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/adff5722-1d04-4eb4-8f9d-2cd397f46fb5/brats-dream-challenge-infra-main/validation-phase-workflow.cwl#score/status
STDERR: 2021-08-11T05:41:34.323448573Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:182:9: checking object
STDERR: 2021-08-11T05:41:34.323452014Z `brats-dream-challenge-infra-main/validation-phase-workflow.cwl#check_final_status/previous_email_finished`
STDERR: 2021-08-11T05:41:34.323455334Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:183:9: Field `source`
STDERR: 2021-08-11T05:41:34.323458300Z references unknown identifier
STDERR: 2021-08-11T05:41:34.323461811Z `file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/adff5722-1d04-4eb4-8f9d-2cd397f46fb5/brats-dream-challenge-infra-main/validation-phase-workflow.cwl#email_score/finished`,
STDERR: 2021-08-11T05:41:34.323465559Z tried
STDERR: 2021-08-11T05:41:34.323469210Z file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/adff5722-1d04-4eb4-8f9d-2cd397f46fb5/brats-dream-challenge-infra-main/validation-phase-workflow.cwl#file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/adff5722-1d04-4eb4-8f9d-2cd397f46fb5/brats-dream-challenge-infra-main/validation-phase-workflow.cwl#email_score/finished
Dear @duyphuongcri ,
Thank you for participating!
I looked into your submission and things should be working again now. Please let me know if you receive additional errors.