Dear Organizers,
I got this error but I can't understand meaning, my ID submission: 9714054. Please help me to solve it! The detail log information is that:
"
STDERR: 2021-08-12T05:58:00.228245257Z 0665eb27dc6b 2021-08-12 05:58:00,227 MainThread INFO cwltool: Resolved '/var/lib/docker/volumes/workflow_orchestrator_shared/_data/433ff982-027e-47b2-8045-f899a5e2bf83/brats-dream-challenge-infra-main/validation-phase-workflow.cwl' to 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/433ff982-027e-47b2-8045-f899a5e2bf83/brats-dream-challenge-infra-main/validation-phase-workflow.cwl'
STDERR: 2021-08-12T05:58:04.732931541Z 0665eb27dc6b 2021-08-12 05:58:04,732 MainThread WARNING cwltool: Workflow checker warning:
STDERR: 2021-08-12T05:58:04.732976379Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:55:9: Source 'filepath' of type
STDERR: 2021-08-12T05:58:04.732981509Z ["null", "File"] may be
STDERR: 2021-08-12T05:58:04.732985584Z incompatible
STDERR: 2021-08-12T05:58:04.732989059Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:75:9: with sink 'input_file' of
STDERR: 2021-08-12T05:58:04.732992906Z type "File"
STDERR: 2021-08-12T05:58:04.732996496Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:55:9: Source 'filepath' of type
STDERR: 2021-08-12T05:58:04.733003091Z ["null", "File"] may be
STDERR: 2021-08-12T05:58:04.733006484Z incompatible
STDERR: 2021-08-12T05:58:04.733009773Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:135:9: with sink 'input_file' of
STDERR: 2021-08-12T05:58:04.733013271Z type "File"
STDERR: 2021-08-12T05:58:06.150276433Z 0665eb27dc6b 2021-08-12 05:58:06,149 MainThread INFO toil: Running Toil version 4.1.0-5ad5e77d98e1456b4f70f5b00e688a43cdce2ebe.
STDERR: 2021-08-12T05:58:07.244985814Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/433ff982-027e-47b2-8045-f899a5e2bf83/node-8f1605c0-c823-4957-9df4-d3910a32ea25-16349ee66b573b0d6cff3dbc6912349f/tmp3g0yy9_4/worker_log.txt
STDERR: 2021-08-12T05:58:07.889226686Z 0665eb27dc6b 2021-08-12 05:58:07,888 MainThread INFO toil.leader: 0 jobs are running, 0 jobs are issued and waiting to run
STDERR: 2021-08-12T05:58:07.890346808Z 0665eb27dc6b 2021-08-12 05:58:07,890 MainThread INFO toil.leader: Issued job 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/get_submission.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_get_submission.cwl/instance-9iorxaeo with job batch system ID: 1 and cores: 1, disk: 1.0 G, and memory: 100.0 M
STDERR: 2021-08-12T05:58:07.890537180Z 0665eb27dc6b 2021-08-12 05:58:07,890 MainThread INFO toil.leader: Issued job 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/set_permissions.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_set_permissions.cwl/instance-nueyuw24 with job batch system ID: 2 and cores: 1, disk: 1.0 G, and memory: 100.0 M
STDERR: 2021-08-12T05:58:07.890683943Z 0665eb27dc6b 2021-08-12 05:58:07,890 MainThread INFO toil.leader: Issued job 'https://raw.githubusercontent.com/Sage-Bionetworks-Workflows/cwl-tool-synapseclient/v1.4/cwl/synapse-get-tool.cwl#synapse-get' synapse kind-https_raw.githubusercontent.com_Sage-Bionetworks-Workflows_cwl-tool-synapseclient_v1.4_cwl_synapse-get-tool.cwl_synapse-get/instance-210n9d5x with job batch system ID: 3 and cores: 1, disk: 1.0 G, and memory: 100.0 M
STDERR: 2021-08-12T05:58:09.177045672Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/433ff982-027e-47b2-8045-f899a5e2bf83/node-8f1605c0-c823-4957-9df4-d3910a32ea25-16349ee66b573b0d6cff3dbc6912349f/tmp2fluozm6/worker_log.txt
STDERR: 2021-08-12T05:58:09.343744730Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/433ff982-027e-47b2-8045-f899a5e2bf83/node-8f1605c0-c823-4957-9df4-d3910a32ea25-16349ee66b573b0d6cff3dbc6912349f/tmponziqhnd/worker_log.txt
STDERR: 2021-08-12T05:58:09.555303288Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/433ff982-027e-47b2-8045-f899a5e2bf83/node-8f1605c0-c823-4957-9df4-d3910a32ea25-16349ee66b573b0d6cff3dbc6912349f/tmp18eljsyr/worker_log.txt
"
thanks you very much!
Created by carrie cai carrie.xh thanks your reply! I understand it, thanks you? @carrie.xh ,
Don't worry, your submission has not encountered an error yet -- if it did, you would receive an email that stated so. Furthermore, the status and submission_status would both be INVALID in the dashboard. Given what you have copied-pasted, your submission is still under evaluation (hence the status of EVALUATION_IN_PROGRESS) and it has passed all of our initial validation checks (hence the submission_status of VALIDATED). Once it has finished scoring, you will receive the scores.
Hope this helps! yes, I can't get score, and "Submission Dashboard" detail information is that
"9714054 08/11/2021 1:49 PM casxm VALIDATED EVALUATION_IN_PROGRESS 9714054"
thanks you very much!
Hi @carrie.xh ,
Did you get an email that said there was an error with your submission? I checked the Dashboard and it looks like submission ID 9714054 is currently being evaluated (no errors have been thrown yet as far as I can tell).