Hi, Would you please help me find out the problem for my submission(ID 9714347)? log STDERR: 2021-08-15T22:31:55.075988905Z 5cc81a722f4d 2021-08-15 22:31:55,075 MainThread INFO cwltool: Resolved '/var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/brats-dream-challenge-infra-main/validation-phase-workflow.cwl' to 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/brats-dream-challenge-infra-main/validation-phase-workflow.cwl' STDERR: 2021-08-15T22:32:00.587989700Z 5cc81a722f4d 2021-08-15 22:32:00,587 MainThread WARNING cwltool: Workflow checker warning: STDERR: 2021-08-15T22:32:00.588068789Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:55:9: Source 'filepath' of type STDERR: 2021-08-15T22:32:00.588074182Z ["null", "File"] may be STDERR: 2021-08-15T22:32:00.588089085Z incompatible STDERR: 2021-08-15T22:32:00.588092821Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:135:9: with sink 'input_file' of STDERR: 2021-08-15T22:32:00.588096133Z type "File" STDERR: 2021-08-15T22:32:00.588099097Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:55:9: Source 'filepath' of type STDERR: 2021-08-15T22:32:00.588102368Z ["null", "File"] may be STDERR: 2021-08-15T22:32:00.588105619Z incompatible STDERR: 2021-08-15T22:32:00.588108958Z brats-dream-challenge-infra-main/validation-phase-workflow.cwl:75:9: with sink 'input_file' of STDERR: 2021-08-15T22:32:00.588111937Z type "File" STDERR: 2021-08-15T22:32:02.075572078Z 5cc81a722f4d 2021-08-15 22:32:02,075 MainThread INFO toil: Running Toil version 4.1.0-5ad5e77d98e1456b4f70f5b00e688a43cdce2ebe. STDERR: 2021-08-15T22:32:03.366565203Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/node-12461920-c8c0-4776-97b4-3b68923662fd-16349ee66b573b0d6cff3dbc6912349f/tmp0_3iymky/worker_log.txt STDERR: 2021-08-15T22:32:03.756146416Z 5cc81a722f4d 2021-08-15 22:32:03,755 MainThread INFO toil.leader: 0 jobs are running, 0 jobs are issued and waiting to run STDERR: 2021-08-15T22:32:03.756957973Z 5cc81a722f4d 2021-08-15 22:32:03,756 MainThread INFO toil.leader: Issued job 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/get_submission.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_get_submission.cwl/instance-4ouor18l with job batch system ID: 1 and cores: 1, disk: 1.0 G, and memory: 100.0 M STDERR: 2021-08-15T22:32:03.757108084Z 5cc81a722f4d 2021-08-15 22:32:03,756 MainThread INFO toil.leader: Issued job 'https://raw.githubusercontent.com/Sage-Bionetworks-Workflows/cwl-tool-synapseclient/v1.4/cwl/synapse-get-tool.cwl#synapse-get' synapse kind-https_raw.githubusercontent.com_Sage-Bionetworks-Workflows_cwl-tool-synapseclient_v1.4_cwl_synapse-get-tool.cwl_synapse-get/instance-jgkl66vc with job batch system ID: 2 and cores: 1, disk: 1.0 G, and memory: 100.0 M STDERR: 2021-08-15T22:32:03.757299673Z 5cc81a722f4d 2021-08-15 22:32:03,757 MainThread INFO toil.leader: Issued job 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/set_permissions.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_set_permissions.cwl/instance-tqwinza7 with job batch system ID: 3 and cores: 1, disk: 1.0 G, and memory: 100.0 M STDERR: 2021-08-15T22:32:05.377630015Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/node-12461920-c8c0-4776-97b4-3b68923662fd-16349ee66b573b0d6cff3dbc6912349f/tmp_plwxx4t/worker_log.txt STDERR: 2021-08-15T22:32:05.695790576Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/node-12461920-c8c0-4776-97b4-3b68923662fd-16349ee66b573b0d6cff3dbc6912349f/tmpvxukw58t/worker_log.txt STDERR: 2021-08-15T22:32:05.742782945Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/node-12461920-c8c0-4776-97b4-3b68923662fd-16349ee66b573b0d6cff3dbc6912349f/tmp9akv6u4a/worker_log.txt STDERR: 2021-08-15T22:33:24.199684021Z 5cc81a722f4d 2021-08-15 22:33:24,196 MainThread INFO toil.leader: Job ended: 'https://raw.githubusercontent.com/Sage-Bionetworks-Workflows/cwl-tool-synapseclient/v1.4/cwl/synapse-get-tool.cwl#synapse-get' synapse kind-https_raw.githubusercontent.com_Sage-Bionetworks-Workflows_cwl-tool-synapseclient_v1.4_cwl_synapse-get-tool.cwl_synapse-get/instance-jgkl66vc STDERR: 2021-08-15T22:33:28.957674763Z 5cc81a722f4d 2021-08-15 22:33:28,957 MainThread INFO toil.leader: Job ended: 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/set_permissions.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_set_permissions.cwl/instance-tqwinza7 STDERR: 2021-08-15T22:33:33.774219486Z 5cc81a722f4d 2021-08-15 22:33:33,773 MainThread INFO toil.leader: Job ended: 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/get_submission.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_get_submission.cwl/instance-4ouor18l STDERR: 2021-08-15T22:33:33.774960748Z 5cc81a722f4d 2021-08-15 22:33:33,774 MainThread INFO toil.leader: Issued job 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/brats-dream-challenge-infra-main/validate.cwl' validate.py kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_42348632-248c-4e72-b75f-ce78db65fa3f_brats-dream-challenge-infra-main_validate.cwl/instance-djc33yid with job batch system ID: 4 and cores: 1, disk: 1.0 G, and memory: 100.0 M STDERR: 2021-08-15T22:33:35.044597293Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/node-12461920-c8c0-4776-97b4-3b68923662fd-16349ee66b573b0d6cff3dbc6912349f/tmpzgx6h8mm/worker_log.txt STDERR: 2021-08-15T22:34:07.111378027Z 5cc81a722f4d 2021-08-15 22:34:07,110 MainThread INFO toil.leader: Job ended: 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/brats-dream-challenge-infra-main/validate.cwl' validate.py kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_42348632-248c-4e72-b75f-ce78db65fa3f_brats-dream-challenge-infra-main_validate.cwl/instance-djc33yid STDERR: 2021-08-15T22:34:07.112418589Z 5cc81a722f4d 2021-08-15 22:34:07,112 MainThread INFO toil.leader: Issued job 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/validate_email.cwl' python3 kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_validate_email.cwl/instance-kve5rtkp with job batch system ID: 5 and cores: 1, disk: 1.0 G, and memory: 100.0 M STDERR: 2021-08-15T22:34:07.112447437Z 5cc81a722f4d 2021-08-15 22:34:07,112 MainThread INFO toil.leader: Issued job 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/annotate_submission.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_annotate_submission.cwl/instance-77j_1n24 with job batch system ID: 6 and cores: 1, disk: 1.0 G, and memory: 100.0 M STDERR: 2021-08-15T22:34:08.387307287Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/node-12461920-c8c0-4776-97b4-3b68923662fd-16349ee66b573b0d6cff3dbc6912349f/tmp8iv3n_ay/worker_log.txt STDERR: 2021-08-15T22:34:08.714211211Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/node-12461920-c8c0-4776-97b4-3b68923662fd-16349ee66b573b0d6cff3dbc6912349f/tmplfiqezya/worker_log.txt STDERR: 2021-08-15T22:35:05.677712136Z 5cc81a722f4d 2021-08-15 22:35:05,677 MainThread INFO toil.leader: Job ended: 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/validate_email.cwl' python3 kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_validate_email.cwl/instance-kve5rtkp STDERR: 2021-08-15T22:35:09.596153033Z 5cc81a722f4d 2021-08-15 22:35:09,595 MainThread INFO toil.leader: Job ended: 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/annotate_submission.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_annotate_submission.cwl/instance-77j_1n24 STDERR: 2021-08-15T22:35:09.597059464Z 5cc81a722f4d 2021-08-15 22:35:09,596 MainThread INFO toil.leader: Issued job 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/check_status.cwl' kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_check_status.cwl/instance-ibfw75gz with job batch system ID: 7 and cores: 1, disk: 1.0 G, and memory: 100.0 M STDERR: 2021-08-15T22:35:10.815261882Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/node-12461920-c8c0-4776-97b4-3b68923662fd-16349ee66b573b0d6cff3dbc6912349f/tmppe_mnr5g/worker_log.txt STDERR: 2021-08-15T22:35:11.405967400Z 5cc81a722f4d 2021-08-15 22:35:11,404 MainThread INFO toil.leader: Job ended: 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/check_status.cwl' kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_check_status.cwl/instance-ibfw75gz STDERR: 2021-08-15T22:35:11.406004070Z 5cc81a722f4d 2021-08-15 22:35:11,405 MainThread INFO toil.leader: Issued job 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/brats-dream-challenge-infra-main/score.cwl' score.py kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_42348632-248c-4e72-b75f-ce78db65fa3f_brats-dream-challenge-infra-main_score.cwl/instance-c3si6u18 with job batch system ID: 8 and cores: 1, disk: 1.0 G, and memory: 100.0 M STDERR: 2021-08-15T22:35:12.577221658Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/node-12461920-c8c0-4776-97b4-3b68923662fd-16349ee66b573b0d6cff3dbc6912349f/tmpcandrl5a/worker_log.txt STDERR: 2021-08-15T22:35:41.121369978Z 5cc81a722f4d 2021-08-15 22:35:41,120 MainThread INFO toil.leader: Job ended: 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/brats-dream-challenge-infra-main/score.cwl' score.py kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_42348632-248c-4e72-b75f-ce78db65fa3f_brats-dream-challenge-infra-main_score.cwl/instance-c3si6u18 STDERR: 2021-08-15T22:35:41.122911066Z 5cc81a722f4d 2021-08-15 22:35:41,122 MainThread INFO toil.leader: Issued job 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/annotate_submission.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_annotate_submission.cwl/instance-zuj9k1qh with job batch system ID: 9 and cores: 1, disk: 1.0 G, and memory: 100.0 M STDERR: 2021-08-15T22:35:41.123409608Z 5cc81a722f4d 2021-08-15 22:35:41,123 MainThread INFO toil.leader: Issued job 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/brats-dream-challenge-infra-main/score_email.cwl' python3 kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_42348632-248c-4e72-b75f-ce78db65fa3f_brats-dream-challenge-infra-main_score_email.cwl/instance-g1jlf_jp with job batch system ID: 10 and cores: 1, disk: 1.0 G, and memory: 100.0 M STDERR: 2021-08-15T22:35:42.393123308Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/node-12461920-c8c0-4776-97b4-3b68923662fd-16349ee66b573b0d6cff3dbc6912349f/tmpwdh6ofbj/worker_log.txt STDERR: 2021-08-15T22:35:42.400624194Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/node-12461920-c8c0-4776-97b4-3b68923662fd-16349ee66b573b0d6cff3dbc6912349f/tmp77p50ryt/worker_log.txt STDERR: 2021-08-15T22:36:40.397149271Z 5cc81a722f4d 2021-08-15 22:36:40,395 MainThread INFO toil.leader: Job ended: 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/annotate_submission.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_annotate_submission.cwl/instance-zuj9k1qh STDERR: 2021-08-15T22:36:45.247286724Z 5cc81a722f4d 2021-08-15 22:36:45,245 MainThread INFO toil.leader: Job ended: 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/brats-dream-challenge-infra-main/score_email.cwl' python3 kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_42348632-248c-4e72-b75f-ce78db65fa3f_brats-dream-challenge-infra-main_score_email.cwl/instance-g1jlf_jp STDERR: 2021-08-15T22:36:45.247317055Z 5cc81a722f4d 2021-08-15 22:36:45,246 MainThread INFO toil.leader: Issued job 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/check_status.cwl' kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_check_status.cwl/instance-wdtgmus9 with job batch system ID: 11 and cores: 1, disk: 1.0 G, and memory: 100.0 M STDERR: 2021-08-15T22:36:46.423410434Z INFO:toil.worker:Redirecting logging to /var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/node-12461920-c8c0-4776-97b4-3b68923662fd-16349ee66b573b0d6cff3dbc6912349f/tmpcnriyupz/worker_log.txt STDERR: 2021-08-15T22:36:46.795710456Z 5cc81a722f4d 2021-08-15 22:36:46,795 MainThread INFO toil.leader: Job ended: 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/check_status.cwl' kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_check_status.cwl/instance-wdtgmus9 STDERR: 2021-08-15T22:36:46.796545203Z 5cc81a722f4d 2021-08-15 22:36:46,796 MainThread WARNING toil.leader: The job seems to have left a log file, indicating failure: 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/check_status.cwl' kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_check_status.cwl/instance-wdtgmus9 STDERR: 2021-08-15T22:36:46.796923941Z 5cc81a722f4d 2021-08-15 22:36:46,796 MainThread WARNING toil.leader: Log from job kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_check_status.cwl/instance-wdtgmus9 follows: STDERR: 2021-08-15T22:36:46.796934009Z =========> STDERR: 2021-08-15T22:36:46.796938163Z INFO:toil.worker:---TOIL WORKER OUTPUT LOG--- STDERR: 2021-08-15T22:36:46.796941854Z INFO:toil:Running Toil version 4.1.0-5ad5e77d98e1456b4f70f5b00e688a43cdce2ebe. STDERR: 2021-08-15T22:36:46.796945204Z Failed to evaluate expression: STDERR: 2021-08-15T22:36:46.796948336Z Expression evaluation error: STDERR: 2021-08-15T22:36:46.796951491Z Expecting value: line 1 column 1 (char 0) STDERR: 2021-08-15T22:36:46.796954771Z script was: STDERR: 2021-08-15T22:36:46.796957857Z 01 "use strict"; STDERR: 2021-08-15T22:36:46.796961043Z 02 var inputs = { STDERR: 2021-08-15T22:36:46.796964282Z 03 "status": "INVALID", STDERR: 2021-08-15T22:36:46.796967803Z 04 "previous_annotation_finished": true, STDERR: 2021-08-15T22:36:46.796971246Z 05 "previous_email_finished": true STDERR: 2021-08-15T22:36:46.796974693Z 06 }; STDERR: 2021-08-15T22:36:46.796978051Z 07 var self = null; STDERR: 2021-08-15T22:36:46.796981282Z 08 var runtime = { STDERR: 2021-08-15T22:36:46.796984479Z 09 "cores": 1, STDERR: 2021-08-15T22:36:46.796987574Z 10 "ram": 100.0, STDERR: 2021-08-15T22:36:46.796991118Z 11 "tmpdirSize": 1024, STDERR: 2021-08-15T22:36:46.796994191Z 12 "outdirSize": 0.95367431640625, STDERR: 2021-08-15T22:36:46.796997849Z 13 "tmpdir": "/var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/tmpjrjr8kaj", STDERR: 2021-08-15T22:36:46.797002190Z 14 "outdir": "/var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/node-12461920-c8c0-4776-97b4-3b68923662fd-16349ee66b573b0d6cff3dbc6912349f/tmpcnriyupz/95e8bd1f-6e52-4042-a547-00ed92f85695/tx_y27kco/tmp-outjhlg4lwq" STDERR: 2021-08-15T22:36:46.797006423Z 15 }; STDERR: 2021-08-15T22:36:46.797009849Z 16 (function(){ STDERR: 2021-08-15T22:36:46.797013133Z 17 if(inputs.status == "INVALID"){ STDERR: 2021-08-15T22:36:46.797016278Z 18 throw 'invalid submission'; STDERR: 2021-08-15T22:36:46.797019986Z 19 } else { STDERR: 2021-08-15T22:36:46.797023041Z 20 return {finished: true}; STDERR: 2021-08-15T22:36:46.797026331Z 21 } STDERR: 2021-08-15T22:36:46.797029451Z 22 })() STDERR: 2021-08-15T22:36:46.797032458Z stdout was: '' STDERR: 2021-08-15T22:36:46.797042632Z stderr was: 'invalid submission' STDERR: 2021-08-15T22:36:46.797046108Z STDERR: 2021-08-15T22:36:46.797049802Z WARNING:cwltool:Failed to evaluate expression: STDERR: 2021-08-15T22:36:46.797053214Z Expression evaluation error: STDERR: 2021-08-15T22:36:46.797056234Z Expecting value: line 1 column 1 (char 0) STDERR: 2021-08-15T22:36:46.797059404Z script was: STDERR: 2021-08-15T22:36:46.797062320Z 01 "use strict"; STDERR: 2021-08-15T22:36:46.797065626Z 02 var inputs = { STDERR: 2021-08-15T22:36:46.797068642Z 03 "status": "INVALID", STDERR: 2021-08-15T22:36:46.797071887Z 04 "previous_annotation_finished": true, STDERR: 2021-08-15T22:36:46.797075030Z 05 "previous_email_finished": true STDERR: 2021-08-15T22:36:46.797078754Z 06 }; STDERR: 2021-08-15T22:36:46.797081683Z 07 var self = null; STDERR: 2021-08-15T22:36:46.797084918Z 08 var runtime = { STDERR: 2021-08-15T22:36:46.797088126Z 09 "cores": 1, STDERR: 2021-08-15T22:36:46.797091518Z 10 "ram": 100.0, STDERR: 2021-08-15T22:36:46.797094622Z 11 "tmpdirSize": 1024, STDERR: 2021-08-15T22:36:46.797097918Z 12 "outdirSize": 0.95367431640625, STDERR: 2021-08-15T22:36:46.797101151Z 13 "tmpdir": "/var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/tmpjrjr8kaj", STDERR: 2021-08-15T22:36:46.797105593Z 14 "outdir": "/var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/node-12461920-c8c0-4776-97b4-3b68923662fd-16349ee66b573b0d6cff3dbc6912349f/tmpcnriyupz/95e8bd1f-6e52-4042-a547-00ed92f85695/tx_y27kco/tmp-outjhlg4lwq" STDERR: 2021-08-15T22:36:46.797109411Z 15 }; STDERR: 2021-08-15T22:36:46.797112778Z 16 (function(){ STDERR: 2021-08-15T22:36:46.797115825Z 17 if(inputs.status == "INVALID"){ STDERR: 2021-08-15T22:36:46.797119227Z 18 throw 'invalid submission'; STDERR: 2021-08-15T22:36:46.797122232Z 19 } else { STDERR: 2021-08-15T22:36:46.797125419Z 20 return {finished: true}; STDERR: 2021-08-15T22:36:46.797129005Z 21 } STDERR: 2021-08-15T22:36:46.797131987Z 22 })() STDERR: 2021-08-15T22:36:46.797134826Z stdout was: '' STDERR: 2021-08-15T22:36:46.797137547Z stderr was: 'invalid submission' STDERR: 2021-08-15T22:36:46.797140712Z STDERR: 2021-08-15T22:36:46.797143626Z Traceback (most recent call last): STDERR: 2021-08-15T22:36:46.797147122Z File "/usr/local/lib/python3.6/site-packages/toil/worker.py", line 366, in workerScript STDERR: 2021-08-15T22:36:46.797150479Z job._runner(jobGraph=jobGraph, jobStore=jobStore, fileStore=fileStore, defer=defer) STDERR: 2021-08-15T22:36:46.797153899Z File "/usr/local/lib/python3.6/site-packages/toil/job.py", line 1392, in _runner STDERR: 2021-08-15T22:36:46.797157187Z returnValues = self._run(jobGraph, fileStore) STDERR: 2021-08-15T22:36:46.797162841Z File "/usr/local/lib/python3.6/site-packages/toil/job.py", line 1329, in _run STDERR: 2021-08-15T22:36:46.797166559Z return self.run(fileStore) STDERR: 2021-08-15T22:36:46.797169644Z File "/usr/local/lib/python3.6/site-packages/toil/cwl/cwltoil.py", line 937, in run STDERR: 2021-08-15T22:36:46.797173119Z raise cwltool.errors.WorkflowException(status) STDERR: 2021-08-15T22:36:46.797176415Z cwltool.errors.WorkflowException: permanentFail STDERR: 2021-08-15T22:36:46.797179867Z ERROR:toil.worker:Exiting the worker because of a failed job on host 5cc81a722f4d STDERR: 2021-08-15T22:36:46.797183539Z WARNING:toil.jobGraph:Due to failure we are reducing the remaining retry count of job 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/check_status.cwl' kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_check_status.cwl/instance-wdtgmus9 with ID kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_check_status.cwl/instance-wdtgmus9 to 0 STDERR: 2021-08-15T22:36:46.797188090Z <========= STDERR: 2021-08-15T22:36:46.797711341Z 5cc81a722f4d 2021-08-15 22:36:46,797 MainThread WARNING toil.leader: Job 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/check_status.cwl' kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_check_status.cwl/instance-wdtgmus9 with ID kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_check_status.cwl/instance-wdtgmus9 is completely failed STDERR: 2021-08-15T22:37:04.630410396Z 5cc81a722f4d 2021-08-15 22:37:04,630 MainThread INFO toil.leader: Finished toil run with 11 failed jobs. STDERR: 2021-08-15T22:37:04.630567028Z 5cc81a722f4d 2021-08-15 22:37:04,630 MainThread INFO toil.leader: Failed jobs at end of the run: 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/annotate_submission.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_annotate_submission.cwl/instance-77j_1n24 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/brats-dream-challenge-infra-main/validate.cwl' validate.py kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_42348632-248c-4e72-b75f-ce78db65fa3f_brats-dream-challenge-infra-main_validate.cwl/instance-djc33yid 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/check_status.cwl' kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_check_status.cwl/instance-wdtgmus9 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/check_status.cwl' kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_check_status.cwl/instance-ibfw75gz 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/brats-dream-challenge-infra-main/score_email.cwl' python3 kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_42348632-248c-4e72-b75f-ce78db65fa3f_brats-dream-challenge-infra-main_score_email.cwl/instance-g1jlf_jp 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/brats-dream-challenge-infra-main/score.cwl' score.py kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_42348632-248c-4e72-b75f-ce78db65fa3f_brats-dream-challenge-infra-main_score.cwl/instance-c3si6u18 'https://raw.githubusercontent.com/Sage-Bionetworks-Workflows/cwl-tool-synapseclient/v1.4/cwl/synapse-get-tool.cwl#synapse-get' synapse kind-https_raw.githubusercontent.com_Sage-Bionetworks-Workflows_cwl-tool-synapseclient_v1.4_cwl_synapse-get-tool.cwl_synapse-get/instance-jgkl66vc 'CWLWorkflow' kind-CWLWorkflow/instance-dky8iks7 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/validate_email.cwl' python3 kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_validate_email.cwl/instance-kve5rtkp 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/annotate_submission.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_annotate_submission.cwl/instance-zuj9k1qh 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/get_submission.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_get_submission.cwl/instance-4ouor18l STDERR: 2021-08-15T22:37:04.645357061Z Traceback (most recent call last): STDERR: 2021-08-15T22:37:04.645388664Z File "/usr/local/bin/toil-cwl-runner", line 8, in STDERR: 2021-08-15T22:37:04.645395153Z sys.exit(main()) STDERR: 2021-08-15T22:37:04.645398832Z File "/usr/local/lib/python3.6/site-packages/toil/cwl/cwltoil.py", line 1691, in main STDERR: 2021-08-15T22:37:04.645402559Z outobj = toil.start(wf1) STDERR: 2021-08-15T22:37:04.645406097Z File "/usr/local/lib/python3.6/site-packages/toil/common.py", line 829, in start STDERR: 2021-08-15T22:37:04.645409774Z return self._runMainLoop(rootJobGraph) STDERR: 2021-08-15T22:37:04.645413514Z File "/usr/local/lib/python3.6/site-packages/toil/common.py", line 1120, in _runMainLoop STDERR: 2021-08-15T22:37:04.645417434Z jobCache=self._jobCache).run() STDERR: 2021-08-15T22:37:04.645420686Z File "/usr/local/lib/python3.6/site-packages/toil/leader.py", line 269, in run STDERR: 2021-08-15T22:37:04.645424308Z raise FailedJobsException(self.config.jobStore, self.toilState.totalFailedJobs, self.jobStore) STDERR: 2021-08-15T22:37:04.645447185Z toil.leader.FailedJobsException: The job store 'file:/var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/tmpgxcsc7fw' contains 11 failed jobs: 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/annotate_submission.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_annotate_submission.cwl/instance-77j_1n24, 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/brats-dream-challenge-infra-main/validate.cwl' validate.py kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_42348632-248c-4e72-b75f-ce78db65fa3f_brats-dream-challenge-infra-main_validate.cwl/instance-djc33yid, 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/check_status.cwl' kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_check_status.cwl/instance-wdtgmus9, 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/check_status.cwl' kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_check_status.cwl/instance-ibfw75gz, 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/brats-dream-challenge-infra-main/score_email.cwl' python3 kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_42348632-248c-4e72-b75f-ce78db65fa3f_brats-dream-challenge-infra-main_score_email.cwl/instance-g1jlf_jp, 'file:///var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/brats-dream-challenge-infra-main/score.cwl' score.py kind-file_var_lib_docker_volumes_workflow_orchestrator_shared__data_42348632-248c-4e72-b75f-ce78db65fa3f_brats-dream-challenge-infra-main_score.cwl/instance-c3si6u18, 'https://raw.githubusercontent.com/Sage-Bionetworks-Workflows/cwl-tool-synapseclient/v1.4/cwl/synapse-get-tool.cwl#synapse-get' synapse kind-https_raw.githubusercontent.com_Sage-Bionetworks-Workflows_cwl-tool-synapseclient_v1.4_cwl_synapse-get-tool.cwl_synapse-get/instance-jgkl66vc, 'CWLWorkflow' kind-CWLWorkflow/instance-dky8iks7, 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/validate_email.cwl' python3 kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_validate_email.cwl/instance-kve5rtkp, 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/annotate_submission.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_annotate_submission.cwl/instance-zuj9k1qh, 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/get_submission.cwl' challengeutils kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_get_submission.cwl/instance-4ouor18l STDERR: 2021-08-15T22:37:04.645474488Z Log from job 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/check_status.cwl' kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_check_status.cwl/instance-wdtgmus9 follows: STDERR: 2021-08-15T22:37:04.645478799Z =========> STDERR: 2021-08-15T22:37:04.645482480Z INFO:toil.worker:---TOIL WORKER OUTPUT LOG--- STDERR: 2021-08-15T22:37:04.645486137Z INFO:toil:Running Toil version 4.1.0-5ad5e77d98e1456b4f70f5b00e688a43cdce2ebe. STDERR: 2021-08-15T22:37:04.645489826Z Failed to evaluate expression: STDERR: 2021-08-15T22:37:04.645587850Z Expression evaluation error: STDERR: 2021-08-15T22:37:04.645608175Z Expecting value: line 1 column 1 (char 0) STDERR: 2021-08-15T22:37:04.645611604Z script was: STDERR: 2021-08-15T22:37:04.645614737Z 01 "use strict"; STDERR: 2021-08-15T22:37:04.645618029Z 02 var inputs = { STDERR: 2021-08-15T22:37:04.645621069Z 03 "status": "INVALID", STDERR: 2021-08-15T22:37:04.645624455Z 04 "previous_annotation_finished": true, STDERR: 2021-08-15T22:37:04.645627752Z 05 "previous_email_finished": true STDERR: 2021-08-15T22:37:04.645631458Z 06 }; STDERR: 2021-08-15T22:37:04.645634538Z 07 var self = null; STDERR: 2021-08-15T22:37:04.645637795Z 08 var runtime = { STDERR: 2021-08-15T22:37:04.645640892Z 09 "cores": 1, STDERR: 2021-08-15T22:37:04.645644160Z 10 "ram": 100.0, STDERR: 2021-08-15T22:37:04.645647415Z 11 "tmpdirSize": 1024, STDERR: 2021-08-15T22:37:04.645650712Z 12 "outdirSize": 0.95367431640625, STDERR: 2021-08-15T22:37:04.645654049Z 13 "tmpdir": "/var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/tmpjrjr8kaj", STDERR: 2021-08-15T22:37:04.645663581Z 14 "outdir": "/var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/node-12461920-c8c0-4776-97b4-3b68923662fd-16349ee66b573b0d6cff3dbc6912349f/tmpcnriyupz/95e8bd1f-6e52-4042-a547-00ed92f85695/tx_y27kco/tmp-outjhlg4lwq" STDERR: 2021-08-15T22:37:04.645667762Z 15 }; STDERR: 2021-08-15T22:37:04.645670918Z 16 (function(){ STDERR: 2021-08-15T22:37:04.645674121Z 17 if(inputs.status == "INVALID"){ STDERR: 2021-08-15T22:37:04.645677811Z 18 throw 'invalid submission'; STDERR: 2021-08-15T22:37:04.645681022Z 19 } else { STDERR: 2021-08-15T22:37:04.645684224Z 20 return {finished: true}; STDERR: 2021-08-15T22:37:04.645687409Z 21 } STDERR: 2021-08-15T22:37:04.645690515Z 22 })() STDERR: 2021-08-15T22:37:04.645693702Z stdout was: '' STDERR: 2021-08-15T22:37:04.645696974Z stderr was: 'invalid submission' STDERR: 2021-08-15T22:37:04.645700164Z STDERR: 2021-08-15T22:37:04.645703311Z WARNING:cwltool:Failed to evaluate expression: STDERR: 2021-08-15T22:37:04.645706541Z Expression evaluation error: STDERR: 2021-08-15T22:37:04.645709817Z Expecting value: line 1 column 1 (char 0) STDERR: 2021-08-15T22:37:04.645713041Z script was: STDERR: 2021-08-15T22:37:04.645716223Z 01 "use strict"; STDERR: 2021-08-15T22:37:04.645719390Z 02 var inputs = { STDERR: 2021-08-15T22:37:04.645722635Z 03 "status": "INVALID", STDERR: 2021-08-15T22:37:04.645725887Z 04 "previous_annotation_finished": true, STDERR: 2021-08-15T22:37:04.645729241Z 05 "previous_email_finished": true STDERR: 2021-08-15T22:37:04.645732471Z 06 }; STDERR: 2021-08-15T22:37:04.645735651Z 07 var self = null; STDERR: 2021-08-15T22:37:04.645738756Z 08 var runtime = { STDERR: 2021-08-15T22:37:04.645741999Z 09 "cores": 1, STDERR: 2021-08-15T22:37:04.645745177Z 10 "ram": 100.0, STDERR: 2021-08-15T22:37:04.645748304Z 11 "tmpdirSize": 1024, STDERR: 2021-08-15T22:37:04.645751605Z 12 "outdirSize": 0.95367431640625, STDERR: 2021-08-15T22:37:04.645754980Z 13 "tmpdir": "/var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/tmpjrjr8kaj", STDERR: 2021-08-15T22:37:04.645758833Z 14 "outdir": "/var/lib/docker/volumes/workflow_orchestrator_shared/_data/42348632-248c-4e72-b75f-ce78db65fa3f/node-12461920-c8c0-4776-97b4-3b68923662fd-16349ee66b573b0d6cff3dbc6912349f/tmpcnriyupz/95e8bd1f-6e52-4042-a547-00ed92f85695/tx_y27kco/tmp-outjhlg4lwq" STDERR: 2021-08-15T22:37:04.645763314Z 15 }; STDERR: 2021-08-15T22:37:04.645766569Z 16 (function(){ STDERR: 2021-08-15T22:37:04.645769672Z 17 if(inputs.status == "INVALID"){ STDERR: 2021-08-15T22:37:04.645773002Z 18 throw 'invalid submission'; STDERR: 2021-08-15T22:37:04.645776164Z 19 } else { STDERR: 2021-08-15T22:37:04.645783541Z 20 return {finished: true}; STDERR: 2021-08-15T22:37:04.645786892Z 21 } STDERR: 2021-08-15T22:37:04.645790041Z 22 })() STDERR: 2021-08-15T22:37:04.645793133Z stdout was: '' STDERR: 2021-08-15T22:37:04.645808368Z stderr was: 'invalid submission' STDERR: 2021-08-15T22:37:04.645812005Z STDERR: 2021-08-15T22:37:04.645817922Z Traceback (most recent call last): STDERR: 2021-08-15T22:37:04.645821312Z File "/usr/local/lib/python3.6/site-packages/toil/worker.py", line 366, in workerScript STDERR: 2021-08-15T22:37:04.645824770Z job._runner(jobGraph=jobGraph, jobStore=jobStore, fileStore=fileStore, defer=defer) STDERR: 2021-08-15T22:37:04.645828176Z File "/usr/local/lib/python3.6/site-packages/toil/job.py", line 1392, in _runner STDERR: 2021-08-15T22:37:04.645831830Z returnValues = self._run(jobGraph, fileStore) STDERR: 2021-08-15T22:37:04.645835099Z File "/usr/local/lib/python3.6/site-packages/toil/job.py", line 1329, in _run STDERR: 2021-08-15T22:37:04.645838570Z return self.run(fileStore) STDERR: 2021-08-15T22:37:04.645841715Z File "/usr/local/lib/python3.6/site-packages/toil/cwl/cwltoil.py", line 937, in run STDERR: 2021-08-15T22:37:04.645845242Z raise cwltool.errors.WorkflowException(status) STDERR: 2021-08-15T22:37:04.645848493Z cwltool.errors.WorkflowException: permanentFail STDERR: 2021-08-15T22:37:04.645851705Z ERROR:toil.worker:Exiting the worker because of a failed job on host 5cc81a722f4d STDERR: 2021-08-15T22:37:04.645855251Z WARNING:toil.jobGraph:Due to failure we are reducing the remaining retry count of job 'https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.1/cwl/check_status.cwl' kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_check_status.cwl/instance-wdtgmus9 with ID kind-https_raw.githubusercontent.com_Sage-Bionetworks_ChallengeWorkflowTemplates_v3.1_cwl_check_status.cwl/instance-wdtgmus9 to 0 STDERR: 2021-08-15T22:37:04.645859878Z <=========