Hello MILAB,
Your submission (id: 9716180) is invalid, below are the invalid reasons:
No *.nii.gz files found; please check whether running the Docker container locally will result in a NIfTI file within the time constaint.
Sincerely,
Challenge Administrator
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Hi,
I've got an email like above after submitting the Docker image.
However when I tried to run the Docker container locally, I resulted in a .nii.gz output file properly.
So I was wondering why this problem happened.
Is the output I made not saved at all or is it saved as a file in a different format??
Thanks
Created by yoonseokchoi Hi @yoonseokchoi ,
Checking your [log file](https://www.synapse.org/#!Synapse:syn26231591) for submission 9716180, the model is looking for a non-existent file:
```python
sitk::ERROR: The file "/input/BraTS2021_00037_t2.nii.gz/BraTS2021_00037_t2.nii.gz_flair.nii.gz" does not exist.
```
If it helps any, the Docker run command used is something like this:
```bash
docker run --rm \
--network none \
--runtime="nvidia" \
-v /path/to/input:/input:ro \
-v /path/to/output:/output:rw \
{docker image}
```
where the mounted input directory (`/path/to/input`) is one of the case folders, e.g. **BraTS2021_00001**. This would mean that in your container, `/input` would contain the 4 files:
- BraTS2021_ID_flair.nii.gz
- BraTS2021_ID_t1.nii.gz
- BraTS2021_ID_t1ce.nii.gz
- BraTS2021_ID_t2.nii.gz
Apologies for the confusion there, regarding the input files.
Hope this helps!