Dear challenge manager,
I don't understand the correct format of input and output files explicitly.
Could you please provide at least 1 SAMPLE input and output paired file for task 2?
Sincerely yours,
Tsai-Min
Created by TSAI-MIN (??) CHEN (?) chentsaimin @rchai Thanks for your response.
It helped a lot.
Sincerely yours,
Tsai-Min
Hi @chentsaimin,
For Task 2, the input files are _"bam"_ files followed by below file structure and _"bed"_ files are expected for output files. The input/output file formats are mentioned in this [Submission Tutorial (Docker) > Input/output files wiki page](https://www.synapse.org/#!Synapse:syn26720920/wiki/620141). You can find some _"bam"_ files used for the NeurIPS 2021 in [this page](https://trace.ncbi.nlm.nih.gov/Traces/?view=study&acc=SRP356158), i.e. ?site3_donor06_multiome_atac.possorted_genome_bam.bam?.
```
??input
?? ds1.downsampled.pg_11.seed_1.pct_01.bam
?? ds1.downsampled.pg_11.seed_1.pct_05.bam
?? ds1.downsampled.pg_11.seed_1.pct_10.bam
?? ds1.downsampled.pg_11.seed_2.pct_01.bam
?? ...
?? ds1.downsampled.pg_31.seed_9.pct_10.bam
```
Thank you!
Drop files to upload
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