Could you please provide the script or exact pipeline to convert any DICOM volume into the tensors you provided for the challenge (Brain extracted 240*240*155 isotropic resampled volumes or any other additional issues you covered.) I know there is a detailed pipeline description in your arxiv paper. However minute differences may lead to big deflections. I want to check the generalization ability of my trained model on the volumes obtained in our hospitals with my colleagues prosepectively.
Thank you in advance
Created by ozgur koska cakos Dear @vchung
Thank you very much your reply and guidance.
Now I have everything required.
Best regards. Dear @cakos ,
Thank you for your interest!
I believe a response have been made via email, but for others who are interested, the Cancer Imaging Phenomics Toolkit (CaPTK) can be used. Relevant links are:
* [GitHub repository](https://github.com/CBICA/CaPTk)
* [Documentation](https://cbica.github.io/CaPTk/preprocessing_dcm2nii.html)