Hi, I'm sorry to ask for your help with a problem here.
According to the description in the CMC literature(Fromer et al., 2016 Nature Neuroscience), gene-level eQTL (gene expression quantitative trait loci) were derived using the **N = 467 genetically inferred Caucasian samples (209 subjects with SCZ, 206 controls, and 52 AFF cases)** . However, Caucasian samples were extracted according to the conditions, and 477 samples were found.
Could you please tell me which sample data(10 redundant samples) need to remove ?
I tried to find the explanations, however, it seems there are no interpretations.
Created by xiaoyan li adelalady Here is the metadata for the gene expression (syn3346807) and SNP genotyping (syn3346441) from release 1. Link the Individual IDs in the assay metadata file to the clinical data: syn3354385. I hope that helps