icNF97.2b.markdup.sorted.bam

syn29531719

Created By Robert Allaway allawayr

age: 62
sex: Female
assay: RNA-seq
tissue: primary tumor
ageUnit: years
species: Homo sapiens
studyId: syn11374339
cellType: schwann
dataType: AlignedReads
platform: Illumina NovaSeq 6000
workflow: STAR and Salmon
aliquotID: s8_rna.tgcactaggc-accagaagta.hc5gydsx3_tgcactaggc-accagaagta_l002
diagnosis: Neurofibromatosis type 1
studyName: Genetic Studies of Neurofibromatosis
tumorType: Cutaneous Neurofibroma
fileFormat: bam
initiative: Cutaneous Neurofibroma Initiative
specimenID: icNF97.2b
totalReads: 57840394
dataSubtype: processed
nf1Genotype: -/-
nf2Genotype: Unknown
individualID: UF470
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.7/output#star-and-salmon
fundingAgency: NTAP
modelSystemName: icNF97.2b
genomicReference: GRCh38
parentSpecimenID: UF470 T2
averageInsertSize: 1283.4
averageReadLength: 139
averageBaseQuality: 35.8
readsMappedPercent: 100
pairsOnDifferentChr: 0
readsDuplicatedPercent: 27.2625200305517
specimenPreparationMethod: Fresh collected

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