cNF98.4d.markdup.sorted.bam

syn29532172

Created By Robert Allaway allawayr

age: 66
sex: Male
assay: RNA-seq
tissue: primary tumor
ageUnit: years
species: Homo sapiens
studyId: syn11374339
cellType: schwann
dataType: AlignedReads
platform: Illumina NovaSeq 6000
workflow: STAR and Salmon
aliquotID: s10_rna.cgacttatgc-ctctccaacg.hc5gydsx3_cgacttatgc-ctctccaacg_l002
diagnosis: Neurofibromatosis type 1
studyName: Genetic Studies of Neurofibromatosis
tumorType: Cutaneous Neurofibroma
fileFormat: bam
initiative: Cutaneous Neurofibroma Initiative
specimenID: cNF98.4d
totalReads: 65185514
dataSubtype: processed
nf1Genotype: -/-
nf2Genotype: Unknown
individualID: UF505
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.7/output#star-and-salmon
fundingAgency: NTAP
modelSystemName: cNF98.4d
genomicReference: GRCh38
parentSpecimenID: UF505 T7
averageInsertSize: 1357.1
averageReadLength: 139
averageBaseQuality: 35.9
readsMappedPercent: 100
pairsOnDifferentChr: 0
readsDuplicatedPercent: 29.1501958548643
specimenPreparationMethod: Fresh collected

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