i28cNF.markdup.sorted.bam

syn29532322

Created By Robert Allaway allawayr

sex: Unknown
assay: RNA-seq
tissue: primary tumor
species: Homo sapiens
studyId: syn11374339
cellType: schwann
dataType: AlignedReads
platform: Illumina NovaSeq 6000
workflow: STAR and Salmon
aliquotID: s12_rna.aagcggatta-ttcagatcca.hc5gydsx3_aagcggatta-ttcagatcca_l002
diagnosis: Neurofibromatosis type 1
studyName: Genetic Studies of Neurofibromatosis
tumorType: Cutaneous Neurofibroma
fileFormat: bam
initiative: Cutaneous Neurofibroma Initiative
specimenID: i28cNF
totalReads: 69648102
dataSubtype: processed
nf1Genotype: -/-
nf2Genotype: Unknown
individualID: 28NF (IGTP)
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.7/output#star-and-salmon
fundingAgency: NTAP
modelSystemName: i28cNF
genomicReference: GRCh38
parentSpecimenID: 28cNF (IGTP)
averageInsertSize: 1260.2
averageReadLength: 139
averageBaseQuality: 35.9
readsMappedPercent: 100
pairsOnDifferentChr: 0
readsDuplicatedPercent: 27.8672719609789
specimenPreparationMethod: Fresh collected

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