hTERT_NF1_ipNF05.5.markdup.sorted.bam
syn29532356
Created By
Robert Allaway allawayr
age: 32
sex: Male
assay: RNA-seq
tissue: primary tumor
ageUnit: years
species: Homo sapiens
studyId: syn11374339
cellType: schwann
dataType: AlignedReads
platform: Illumina NovaSeq 6000
workflow: STAR and Salmon
aliquotID: s3_rna.gctctgtgtc-accgcgctaa.hc5gydsx3_gctctgtgtc-accgcgctaa_l002
diagnosis: Neurofibromatosis type 1
studyName: Genetic Studies of Neurofibromatosis
tumorType: Plexiform Neurofibroma
fileFormat: bam
initiative: Cutaneous Neurofibroma Initiative
specimenID: hTERT NF1 ipNF05.5
totalReads: 74893260
dataSubtype: processed
nf1Genotype: -/-
nf2Genotype: Unknown
individualID: PN25
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.7/output#star-and-salmon
fundingAgency: NTAP
modelSystemName: hTERT NF1 ipNF05.5
genomicReference: GRCh38
parentSpecimenID: PN25
averageInsertSize: 1368.3
averageReadLength: 139
averageBaseQuality: 35.9
readsMappedPercent: 100
pairsOnDifferentChr: 0
readsDuplicatedPercent: 31.2534425661268
specimenPreparationMethod: Fresh collected
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