icNF98.4c.markdup.sorted.bam

syn29532766

Created By Robert Allaway allawayr

age: 66
sex: Male
assay: RNA-seq
tissue: primary tumor
ageUnit: years
species: Homo sapiens
studyId: syn11374339
cellType: schwann
dataType: AlignedReads
platform: Illumina NovaSeq 6000
workflow: STAR and Salmon
aliquotID: s11_rna.tcatactgtc-gacggtaaca.hc5gydsx3_tcatactgtc-gacggtaaca_l002
diagnosis: Neurofibromatosis type 1
studyName: Genetic Studies of Neurofibromatosis
tumorType: Cutaneous Neurofibroma
fileFormat: bam
initiative: Cutaneous Neurofibroma Initiative
specimenID: icNF98.4c
totalReads: 64205240
dataSubtype: processed
nf1Genotype: -/-
nf2Genotype: Unknown
individualID: UF505
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.7/output#star-and-salmon
fundingAgency: NTAP
modelSystemName: icNF98.4c
genomicReference: GRCh38
parentSpecimenID: UF505 T5
averageInsertSize: 1394.5
averageReadLength: 140
averageBaseQuality: 35.7
readsMappedPercent: 100
pairsOnDifferentChr: 0
readsDuplicatedPercent: 30.9823668597766
specimenPreparationMethod: Fresh collected

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