Hi, community.
I want to access Synthetic Challenge data sets 3 and 4.
Seems other people also wanted to access the data but it seems that the issue has not been settled.
(Inferred from the discussion board)
So is there any way to access the data?
Thanks!
Ahn
Created by Junhak Ahn junhak And you downloaded them using sra toolkit? @Giorgia
Yes. I once downloaded Dream Challenge dataset3 BAM files.
https://www.ncbi.nlm.nih.gov/sra/SRX1026041 Thanks @junhak ... Actually from SRA, is it possible to download BAM files? @Giorgia
For the 2 Runs in SRA of each Challenge version, one is tumor and the other is normal as far as I know.
Hi community,
As said before, I found the fastq file for the three Synthetic Challenge data sets. Talking about tumor/normal sample pairs, I expect that these fastq files (2 per type of dataset) refer to the "tumor": so, I am wondering where is it possible to find fastq files acting as "normal".
Thanks in advance to everybody!!
Hi,
Do you know how to get .bam files? I only found fastq files on NCBI and dream.anailabs.com doesn't work. @kellrott I see only 4 *.puleup files at https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?study=SRP042948
Is it possible to get *.bam or *.fastq files?
Edit: nevermind, found under "Related SRA data"
Thanks
Dmitriy
@kellrott is the only data accessible from this entire challenge the three synthetic datasets listed above?
Thanks!
Tyler The first 3 synthetic datasets can be accessed from https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?study=SRP042948
The remaining synthetic datasets were built using an ICGC sample as a basis, and thus couldn't be shared/distributed without ICGC DACO approval. At this time, there is no authorized provider we can use to distribute those files.