tnopribo_24h_r1.markdup.sorted.bam

syn31992746

Created By Robert Allaway allawayr

age: <5
sex: Male
assay: RNA-seq
ageUnit: years
species: Homo sapiens
studyId: syn21984813
dataType: AlignedReads
platform: Illumina NovaSeq 6000
workflow: STAR and Salmon
Component: GenomicsAssayTemplate
diagnosis: Neurofibromatosis type 1
studyName: Predictive Modeling Utilizing a Preclinical NF1-MPNST Platform Suitable for Precision Oncology
tumorType: Malignant Peripheral Nerve Sheath Tumor
fileFormat: bam
initiative: MPNST Patient-Derived Model Centers
isCellLine: Yes
specimenID: JH-2-002-CL
totalReads: 142762391
dataSubtype: processed
nf1Genotype: -/-
nf2Genotype: +/+
individualID: JH-2-002
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.7/output#star-and-salmon
fundingAgency: NFRI,NIH-NCI
isPrimaryCell: No
modelSystemName: JH-2-002-CL
genomicReference: Gencode_v40 (GRCh38)
parentSpecimenID: JH-2-002-CL
averageInsertSize: 1354.7
averageReadLength: 140
averageBaseQuality: 36.2
readsMappedPercent: 100
pairsOnDifferentChr: 0
readsDuplicatedPercent: 42.0798128829322

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