sageseqr

syn32341471

Created By Abby Vander Linden abby.vanderlinden

url: https://sage-bionetworks.github.io/sageseqr/index.html
program: AMP-AD
summary: The sageseqr workflow takes RNA-seq gene counts and sample metadata as inputs, normalizes counts by conditional quantile normalization (CQN), removes outliers based on a user-defined threshold, empirically selects meaningful covariates and returns differential expression analysis results.
contributor: Kelsey Montgomery, Jake Gockley, Daisy Han
displayName: sageseqr
softwareType: Software package

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