GSM5420915

syn33396117

Created By Robert Allaway allawayr

age:
sex: Unknown
Uuid: 9455720a-e2a8-4325-a6b7-cc7b1b08def8
assay: ChIP-seq
organ:
tissue:
ageUnit:
runType: pairedEnd
species: Homo sapiens
studyId: syn11681835
cellType:
comments: https://www.ncbi.nlm.nih.gov/sra?term=SRX11364741
dataType: chromatinActivity
entityId: syn33396117
platform: Illumina HiSeq 2500
readPair:
Component: GenomicsAssayTemplateExtended
aliquotID:
diagnosis: Neurofibromatosis type 1
readDepth:
studyName: Novel therapeutic development of NF1-associated malignant peripheral nerve sheath tumor (MPNST)
tumorType: Malignant Peripheral Nerve Sheath Tumor
fileFormat: fastq
initiative: Francis S. Collins Scholars Program
isCellLine: Yes
isStranded:
readLength: 50
specimenID: sgCon_DAC_H3K4me3
dataSubtype: raw
libraryPrep:
nf1Genotype: -/-
nf2Genotype: Unknown
individualID: sgCon_DAC_H3K4me3
resourceType: experimentalData
fundingAgency: NTAP
genePerturbed:
isPrimaryCell: No
timePointUnit: days
modelSystemName: M3 MPNST
parentSpecimenID:
readStrandOrigin:
nucleicAcidSource: bulk cell
dissociationMethod:
readPairOrientation:
genePerturbationType: non-targeting control
progressReportNumber: 6
experimentalCondition: 50 nM Decitabine (DAC)
experimentalTimepoint: 5
libraryPreparationMethod:
specimenPreparationMethod: Fresh collected
genePerturbationTechnology: CRISPR

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