GSM5420971

syn33396159

Created By Robert Allaway allawayr

age:
sex: Unknown
Uuid: 4074e0bb-552c-4fda-826d-7fb27b4941a6
assay: bisulfite sequencing
organ:
tissue:
ageUnit:
runType: pairedEnd
species: Homo sapiens
studyId: syn11681835
cellType:
comments: https://www.ncbi.nlm.nih.gov/sra?term=SRX11364781
dataType: chromatinActivity
entityId: syn33396159
platform: Illumina HiSeq 2500
readPair:
Component: GenomicsAssayTemplateExtended
aliquotID:
diagnosis: Neurofibromatosis type 1
readDepth:
studyName: Novel therapeutic development of NF1-associated malignant peripheral nerve sheath tumor (MPNST)
tumorType: Malignant Peripheral Nerve Sheath Tumor
fileFormat: fastq
initiative: Francis S. Collins Scholars Program
isCellLine: Yes
isStranded:
readLength: 100
specimenID: sgSUZ12_DAC_methyl_rep1
dataSubtype: raw
libraryPrep:
nf1Genotype: -/-
nf2Genotype: Unknown
individualID: sgSUZ12_DAC_methyl_rep1
resourceType: experimentalData
fundingAgency: NTAP
genePerturbed: SUZ12
isPrimaryCell:
timePointUnit: days
modelSystemName: M3 MPNST
parentSpecimenID:
readStrandOrigin:
nucleicAcidSource: bulk cell
dissociationMethod:
readPairOrientation:
genePerturbationType: knockout
progressReportNumber: 6
experimentalCondition: 50 nM Decitabine (DAC)
experimentalTimepoint: 4
libraryPreparationMethod: KAPA HyperPrep Kit PCR-free
specimenPreparationMethod: Fresh collected
genePerturbationTechnology: CRISPR

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