2t_RNA.markdup.sorted.bam
syn34722481
Created By
Robert Allaway allawayr
sex: Male
assay: RNA-seq
tissue: primary tumor
species: Homo sapiens
dataType: AlignedReads
platform: Illumina HiSeq 2500
workflow: STAR and Salmon
Component: RNASeqTemplate
aliquotID: 2t_RNA
diagnosis: Not Applicable
tumorType: Malignant Peripheral Nerve Sheath Tumor
fileFormat: bam
isCellLine: No
specimenID: 2t_RNA
totalReads: 53458438
dataSubtype: processed
nf1Genotype: Unknown
nf2Genotype: Unknown
individualID: SRP046943_2
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.7/output#star-and-salmon
isPrimaryCell: No
genomicReference: GRCh38
parentSpecimenID: 2t_RNA
averageInsertSize: 948.5
averageReadLength: 49
averageBaseQuality: 38.3
readsMappedPercent: 100
pairsOnDifferentChr: 0
readsDuplicatedPercent: 16.7169437311281
specimenPreparationMethod: Flash frozen
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