MPNST4_rna.markdup.sorted.bam
syn34723620
Created By
Robert Allaway allawayr
sex: Male
assay: RNA-seq
tissue: primary tumor
species: Homo sapiens
dataType: AlignedReads
platform: Illumina HiSeq 2500
workflow: STAR and Salmon
Component: RNASeqTemplate
aliquotID: MPNST4_rna_lib
diagnosis: Neurofibromatosis type 1
tumorType: Malignant Peripheral Nerve Sheath Tumor
fileFormat: bam
isCellLine: No
specimenID: MPNST4_rna
totalReads: 80825459
dataSubtype: processed
individualID: SRP258993_28
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.7/output#star-and-salmon
isPrimaryCell: No
genomicReference: GRCh38
averageInsertSize: 1737.8
averageReadLength: 124
averageBaseQuality: 36.4
readsMappedPercent: 100
pairsOnDifferentChr: 0
readsDuplicatedPercent: 22.7620618894351
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