5t_RNA.markdup.sorted.bam
syn34724051
Created By
Robert Allaway allawayr
sex: Female
assay: RNA-seq
tissue: primary tumor
species: Homo sapiens
dataType: AlignedReads
platform: Illumina HiSeq 2500
workflow: STAR and Salmon
Component: RNASeqTemplate
aliquotID: 5t_RNA
diagnosis: Neurofibromatosis type 1
tumorType: Malignant Peripheral Nerve Sheath Tumor
fileFormat: bam
isCellLine: No
specimenID: 5t_RNA
totalReads: 158768627
dataSubtype: processed
nf1Genotype: Unknown
nf2Genotype: Unknown
individualID: SRP046943_5
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.7/output#star-and-salmon
isPrimaryCell: No
genomicReference: GRCh38
parentSpecimenID: 5t_RNA
averageInsertSize: 1039.6
averageReadLength: 49
averageBaseQuality: 37.5
readsMappedPercent: 100
pairsOnDifferentChr: 0
readsDuplicatedPercent: 30.3144373730712
specimenPreparationMethod: Flash frozen
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