S238Q6K9.markdup.sorted.bam
syn38870900
Created By
Robert Allaway allawayr
sex: Female
assay: RNA-seq
tissue: recurrent tumor
species: Homo sapiens
dataType: AlignedReads
platform: Illumina HiSeq 4000
workflow: STAR and Salmon
Component: RNASeqTemplate
diagnosis: Not Applicable
tumorType: Malignant Peripheral Nerve Sheath Tumor
fileFormat: bam
isCellLine: No
specimenID: S238Q6K9
totalReads: 50055280
dataSubtype: processed
individualID: MOF_005
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.7/output#star-and-salmon
isPrimaryCell: No
genomicReference: GRCh38
parentSpecimenID: MOF_005_N_02_R3_RNA
averageInsertSize: 1253.3
averageReadLength: 99
averageBaseQuality: 37.6
readsMappedPercent: 100
pairsOnDifferentChr: 0
readsDuplicatedPercent: 22.7803540405727
specimenPreparationMethod: Flash frozen
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