S64P6CH5.markdup.sorted.bam
syn38871411
Created By
Robert Allaway allawayr
sex: Male
assay: RNA-seq
tissue: recurrent tumor
species: Homo sapiens
dataType: AlignedReads
platform: Illumina HiSeq 4000
workflow: STAR and Salmon
Component: RNASeqTemplate
diagnosis: Neurofibromatosis type 1
tumorType: Malignant Peripheral Nerve Sheath Tumor
fileFormat: bam
isCellLine: No
specimenID: S64P6CH5
totalReads: 61162775
dataSubtype: processed
individualID: BCH_004
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.7/output#star-and-salmon
isPrimaryCell: No
genomicReference: GRCh38
parentSpecimenID: BCH_004_Y_02_RNA
averageInsertSize: 1687.2
averageReadLength: 100
averageBaseQuality: 36.3
readsMappedPercent: 100
pairsOnDifferentChr: 0
readsDuplicatedPercent: 54.0862297369601
specimenPreparationMethod: Flash frozen
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