S00005M1.markdup.sorted.bam

syn38871415

Created By Robert Allaway allawayr

sex: Male
assay: RNA-seq
tissue: primary tumor
species: Homo sapiens
dataType: AlignedReads
platform: Illumina HiSeq 4000
workflow: STAR and Salmon
Component: RNASeqTemplate
diagnosis: Neurofibromatosis type 1
tumorType: Malignant Peripheral Nerve Sheath Tumor
fileFormat: bam
isCellLine: No
specimenID: S00005M1
totalReads: 114770068
dataSubtype: processed
individualID: MGH_005
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.7/output#star-and-salmon
isPrimaryCell: No
genomicReference: GRCh38
parentSpecimenID: MGH_005_Y_01_RNA
averageInsertSize: 1639.4
averageReadLength: 100
averageBaseQuality: 36.2
readsMappedPercent: 100
pairsOnDifferentChr: 0
readsDuplicatedPercent: 39.7554874673421
specimenPreparationMethod: Flash frozen

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