S8F4W58Q.markdup.sorted.bam

syn38875363

Created By Robert Allaway allawayr

sex: Female
assay: RNA-seq
tissue: recurrent tumor
species: Homo sapiens
dataType: AlignedReads
platform: Illumina HiSeq 4000
workflow: STAR and Salmon
Component: RNASeqTemplate
diagnosis: Neurofibromatosis type 1
tumorType: Malignant Peripheral Nerve Sheath Tumor
fileFormat: bam
isCellLine: No
specimenID: S8F4W58Q
totalReads: 106953593
dataSubtype: processed
individualID: NAG_026
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.7/output#star-and-salmon
isPrimaryCell: No
genomicReference: GRCh38
parentSpecimenID: NAG_026_Y_04_RNA
averageInsertSize: 2300.9
averageReadLength: 100
averageBaseQuality: 36.2
readsMappedPercent: 100
pairsOnDifferentChr: 0
readsDuplicatedPercent: 37.1928206282888
specimenPreparationMethod: Flash frozen

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