Hello,
I submitted a job last night (syn7342846), but haven't received any type of email notification. Does this mean there was some bug on my end or is it still being queued?
Thanks,
Bill
Created by Bill Lotter bill_lotter Just FYI I finally got an email with a link to the log files late last night. Everything looks like it ran as expected and printed stuff out right away, so not sure where the delay came from. Thanks for checking. Hmm yeah that is weird. One of the very first lines is print('Converting DICOM data to JPEGs...'), so it should have definitely printed something by now. Maybe I'll try cancelling and resubmitting Your submission ID is 7342970
The image has been running for 15 hours:
docker.synapse.org/syn7342846/preprocessing@sha256:7b7fed413c2d6705670676dd7c4656655672f957017669cb6c5e9bfd5e03acf5
Your submission looks like:
```
preprocessing=docker.synapse.org/syn7342846/preprocessing@sha256:7b7fed413c2d6705670676dd7c4656655672f957017669cb6c5e9bfd5e03acf5
training=docker.synapse.org/syn7342846/training@sha256:7b7fed413c2d6705670676dd7c4656655672f957017669cb6c5e9bfd5e03acf5
```
Your container is actively writing *.jpeg files into a folder called /data. No output (stdout or stderr) has been captured for the container.
So the submission seems to be running without incident. I am at a loss as to explain why no output is printed. Perhaps your code has not yet reached its first 'print' statement. Yeah that's what I did and everything ran fine and printed out to stdout, so that's why I'm confused > the log files just contain output to stdout, correct?
stout and also stderr
> it should have begun printing right away.
I recommend running your submission locally (using the pilot data set as input) and verifying the logged information and other output is as expected. Hmm okay. The log files just contain output to stdout, correct? i.e. calling print in python? If that is the case, it should have begun printing right away. Not sure what happened, but I can strictly run one of your examples as a test if you think it is something on my end. @bill_lotter: It looks like your submission has not produced any logs. If or when it does, the system is designed to notify you by email and include a link to the files.
Thanks Bruce. Will I get an email of where I can see the log files? Bill your submission is running. You should be able to see its status in the table at the bottom of this page:
https://www.synapse.org/#!Synapse:syn4224222/wiki/401759
If you do **not** see your submission indicated as running there, please let us know.