Hi.
During prediction, we got the following message indicating failure (for syn7902252):
STDERR: mkdir(name, mode)
STDERR: OSError: [Errno 28] No space left on device:
Could you please look into this?
Thanks.
Seung
Created by Seung Wook Kim swkim Hi Seung,
Please refer to this [thread](https://www.synapse.org/#!Synapse:syn4224222/discussion/threadId=1343) for the motivation behind our design.
> My team's method consists of two stages; therefore, we need to have a directory that's going to temporarily hold data, so that it can be used for the next stage.
> Is that scenario not possible?
Technically, I don't see what prevents you from doing (1) pre-precessing (2) inference (3) cleaning for each subject individually. Hi,
My team's method consists of two stages; therefore, we need to have a directory that's going to temporarily hold data, so that it can be used for the next stage.
Is that scenario not possible?
Do we really need to do everything in a single step including extracting and preprocessing?
Thanks.
Hi Seung,
You don't have access to `/preprocessedData` during inference as stated by the documentation in section [Submitting an inference method for scoring > Pre-processing data](https://www.synapse.org/#!Synapse:syn4224222/wiki/401759).
> "Unlike during training where data can be preprocessed and saved to /preprocessedData (upon availability) to be reused for multiple training submissions, scoring data must be processed on the fly."
This information is also available in the [Cheat Sheet](https://www.synapse.org/#!Synapse:syn4224222/wiki/409763) of the Challenge. Hi,
The submission ID is 8041871.
I'm not sure what you mean by "name" since the email shows only the last few lines of produced logs (could you fix this to produce the entire log in case of failed inference submission?)
but it failed to create a directory in '/preprocessedData'. Of course the script makes '/preprocessedData' before that.
It ran without problem in the express lane, but if we are not supposed to make a directory, where should we put extracted dicom files and preprocessed files?
Thanks.
Seung Hi Seung,
Can you provide the submission ID that encountered the issue (syn7902252 is the ID of you container)?
Can you also provide the value for the variable "name" in your log?
Thanks!