swn_patient_38_tumor_89.markdup.sorted.bam
syn43601782
Created By
Robert Allaway allawayr
sex: Male
assay: RNA-seq
organ: nerves
tissue: primary tumor
species: Homo sapiens
studyId: syn9727752
dataType: AlignedReads
platform: Illumina HiSeq 2000
workflow: STAR and Salmon
Component: GenomicsAssayTemplate
diagnosis: Schwannomatosis
studyName: Synodos Schwannomatosis
tumorType: Schwannoma
fileFormat: bam
initiative: Synodos
isCellLine: No
specimenID: swn_patient_38_tumor_89
totalReads: 53197751
dataSubtype: processed
individualID: swn_patient_38
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.7/output#star-and-salmon
fundingAgency: CTF
isPrimaryCell: No
genomicReference: GRCh38
averageInsertSize: 1197.6
averageReadLength: 74
averageBaseQuality: 34.1
readsMappedPercent: 100
pairsOnDifferentChr: 0
readsDuplicatedPercent: 22.6392314968353
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