2-079_pdx.markdup.sorted.bam
syn49553661
Created By
NF Service nf-osi-service
sex: Female
tissue: PDX tissue
species: Homo sapiens
studyId: syn21984813
dataType: AlignedReads
workflow: STAR and Salmon
Component: RNASeqTemplate
diagnosis: Neurofibromatosis type 1
studyName: Predictive Modeling Utilizing a Preclinical NF1-MPNST Platform Suitable for Precision Oncology
fileFormat: bam
initiative: MPNST Patient-Derived Model Centers
isCellLine: No
specimenID: 2-079_pdx
totalReads: 37044407.0
dataSubtype: processed
nf1Genotype: -/-
nf2Genotype: +/+
individualID: JH-2-079
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.7/output#star-and-salmon
fundingAgency: NFRI,NIH-NCI
isPrimaryCell: No
genomicReference: GRCh38
parentSpecimenID: JH-2-079_MPNST_PDX
averageInsertSize: 645.4
averageReadLength: 134.0
averageBaseQuality: 36.0
readsMappedPercent: 100.0
pairsOnDifferentChr: 0.0
readsDuplicatedPercent: 13.465862741438944
specimenPreparationMethod: Flash frozen
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