mn3_pdx_rna.markdup.sorted.bam
syn49554177
Created By
NF Service nf-osi-service
sex: Male
tissue: PDX tissue
species: Homo sapiens
studyId: syn21984813
dataType: AlignedReads
workflow: STAR and Salmon
Component: RNASeqTemplate
diagnosis: Neurofibromatosis type 1
studyName: Predictive Modeling Utilizing a Preclinical NF1-MPNST Platform Suitable for Precision Oncology
fileFormat: bam
initiative: MPNST Patient-Derived Model Centers
isCellLine: No
specimenID: mn3_pdx_rna
totalReads: 42951934.0
dataSubtype: processed
nf1Genotype: -/-
nf2Genotype: +/+
individualID: MN-3
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.7/output#star-and-salmon
fundingAgency: NFRI,NIH-NCI
isPrimaryCell: No
genomicReference: GRCh38
parentSpecimenID: MN-3_MPNST_PDX
averageInsertSize: 654.0
averageReadLength: 136.0
averageBaseQuality: 36.0
readsMappedPercent: 100.0
pairsOnDifferentChr: 0.0
readsDuplicatedPercent: 12.96211248601751
specimenPreparationMethod: Flash frozen
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