I am writing to inquire about the specific version of Cell Ranger that was used to generate the raw count matrices in , whether derived using only exonic reads (i.e., the gene matrix default for Cell Ranger versions preceding v7) or if they include both intronic and exonic reads (Genefull) which became the default from Cell Ranger v7 onwards.
Best regards,
Created by Marwan mohamed masharaw Dear Marwan,
We used Cell Ranger v7.0.0 with intronic mode (which is on by default).
Kind regards,
Marina
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