Hi,
Is it possible to access the features.csv files from the output of a previous Cell Ranger run on my data? The feature names don't match well with another version of Cell Ranger that I have used, and I'm trying to map the names. Having the features.csv file would be really helpful.
Thank you!
Created by Marwan mohamed masharaw You can download the correct version of gtf from the cellranger reference release notes: https://www.10xgenomics.com/support/software/cell-ranger/latest/release-notes/cr-reference-release-notes
Gene names from 'raw' features.csv match the row.names in the rds files that are attached in GEX_HTO_processed folder.
Kind regards,
Marina hello @marina_terekhova
my data was generated using diffrent version gtf file, so i am asking to get the features.csv file from the output from cellranger from any of the library,
Thanks Hello @masharaw,
I am not sure that I understand the question, sorry. The gene names come from the human genome. Cell Ranger version can influence only the alignment/quantification differences but not the feature names themselves.
Kind regards,
Marina