17cNF_Fibroblasts_27cNF_SchwannCells.markdup.sorted.bam
syn51479586
Created By
NF Service nf-osi-service
assay: RNA-seq
species: Homo sapiens
studyId: syn11374353
cellType: fibroblast schwann
dataType: AlignedReads
platform: Illumina HiSeq 2500
workflow: STAR and Salmon
Component: RNASeqTemplate
diagnosis: Neurofibromatosis type 1
studyName: Identification of pathways triggered by Schwann cell-fibroblast interactions driving cutaneous neurofibroma growth
tumorType: Cutaneous Neurofibroma
fileFormat: bam
initiative: Cutaneous Neurofibroma Initiative
specimenID: 17cNF_Fibroblasts_27cNF_SchwannCells
totalReads: 84532700.0
dataSubtype: processed
nf1Genotype: -/-
nf2Genotype: +/+
individualID: IGTP_17_and_IGTP_27
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.11.2/output#star-and-salmon
fundingAgency: NTAP
genomicReference: GRCh38
averageInsertSize: 973.4
averageReadLength: 117.0
averageBaseQuality: 36.3
readsMappedPercent: 100.0
pairsOnDifferentChr: 0.0
readsDuplicatedPercent: 21.109299714784928
specimenPreparationMethod: Fresh collected
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