3PNF_SC.markdup.sorted.bam
syn51485785
Created By
NF Service nf-osi-service
assay: RNA-seq
studyId: syn4939918
dataType: AlignedReads
platform: Illumina HiSeq 3000
workflow: STAR and Salmon
Component: RNASeqTemplate
studyName: Differentiation of NF1 heterozygous and NF1 homozygous iPS cells into cells of the Neural Crest-Schwann cell lineage
tumorType: Not Applicable
fileFormat: bam
initiative: Open Proposal Program
specimenID: 3PNF_SC
totalReads: 48424813.0
dataSubtype: processed
individualID: IGTP_3
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.11.2/output#star-and-salmon
fundingAgency: NTAP
genomicReference: GRCh38
averageInsertSize: 1263.0
averageReadLength: 144.0
averageBaseQuality: 38.5
readsMappedPercent: 100.0
pairsOnDifferentChr: 0.0
readsDuplicatedPercent: 51.371560278405205
specimenPreparationMethod: Fresh collected
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